Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12336 | 5' | -54.3 | NC_003324.1 | + | 26877 | 0.71 | 0.482931 |
Target: 5'- -gGCUCAAGGgugACGCCGGGcuccauGUCGCGa -3' miRNA: 3'- cgCGAGUUCU---UGCGGCUUu-----CGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 27202 | 0.7 | 0.546116 |
Target: 5'- cGgGCUCAAGAgcgagagcgaccGCGCUGGuguGCUGCGc -3' miRNA: 3'- -CgCGAGUUCU------------UGCGGCUuu-CGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 27351 | 0.69 | 0.622758 |
Target: 5'- cGCGC-CAccAACG-CGGAAGCCGUGUu -3' miRNA: 3'- -CGCGaGUucUUGCgGCUUUCGGCGCA- -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 28193 | 0.67 | 0.696486 |
Target: 5'- uGgGCUCGGGcagggcguuaGACGgCGAagucgcggcuucguGAGCCGCGUc -3' miRNA: 3'- -CgCGAGUUC----------UUGCgGCU--------------UUCGGCGCA- -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 28689 | 0.67 | 0.721312 |
Target: 5'- cGgGCcaCGAGGGCGacagcgggCGGAAGCCGCGa -3' miRNA: 3'- -CgCGa-GUUCUUGCg-------GCUUUCGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 29026 | 0.67 | 0.710568 |
Target: 5'- uUGCUCAAGcAGCGCCaGgcGGCaCGCu- -3' miRNA: 3'- cGCGAGUUC-UUGCGG-CuuUCG-GCGca -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 31128 | 0.67 | 0.688858 |
Target: 5'- aGCGCgucagCAGGAguugaACGCCGA---CCGCGc -3' miRNA: 3'- -CGCGa----GUUCU-----UGCGGCUuucGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 31239 | 0.67 | 0.699747 |
Target: 5'- aGCGC-CA---GCGCCGccGGCCGCa- -3' miRNA: 3'- -CGCGaGUucuUGCGGCuuUCGGCGca -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 32470 | 0.69 | 0.567793 |
Target: 5'- cGCGC-CGAGGugGUgCGAGAGCC-CGa -3' miRNA: 3'- -CGCGaGUUCUugCG-GCUUUCGGcGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 33407 | 0.66 | 0.77346 |
Target: 5'- aCGCUUGcgauGAACGCCc-GAGCCGCu- -3' miRNA: 3'- cGCGAGUu---CUUGCGGcuUUCGGCGca -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 35310 | 0.7 | 0.514128 |
Target: 5'- cGCGC-CGgcGGAuuGCGCCGGcuGCUGCGg -3' miRNA: 3'- -CGCGaGU--UCU--UGCGGCUuuCGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 42015 | 0.68 | 0.633813 |
Target: 5'- aGCGCaUCGGGAACGCgguaccucCGGAuGCgGCGa -3' miRNA: 3'- -CGCG-AGUUCUUGCG--------GCUUuCGgCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 43795 | 0.78 | 0.189832 |
Target: 5'- gGUGC-CGGGAACGCCGGcAAGgCGCGUg -3' miRNA: 3'- -CGCGaGUUCUUGCGGCU-UUCgGCGCA- -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 44015 | 0.69 | 0.600682 |
Target: 5'- cCGC-CGGGAucAUGCCGAgcGCUGCGa -3' miRNA: 3'- cGCGaGUUCU--UGCGGCUuuCGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 44434 | 0.68 | 0.644867 |
Target: 5'- gGCGC-CGAGAcuucgguCGCUGAuGGCCgGCGUu -3' miRNA: 3'- -CGCGaGUUCUu------GCGGCUuUCGG-CGCA- -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 45859 | 0.67 | 0.742521 |
Target: 5'- gGCGC---GGGGCGCCuGAugcgAGGCCGUGa -3' miRNA: 3'- -CGCGaguUCUUGCGG-CU----UUCGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 47794 | 0.66 | 0.763279 |
Target: 5'- uGCGguuCUCAAGcagcauguCGUCGAggAGGCCGCGa -3' miRNA: 3'- -CGC---GAGUUCuu------GCGGCU--UUCGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 48770 | 0.66 | 0.757104 |
Target: 5'- aGCGCUCAAGGuCGCCccuucguauuucuucGAcAAGCCGg-- -3' miRNA: 3'- -CGCGAGUUCUuGCGG---------------CU-UUCGGCgca -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 49073 | 0.67 | 0.742521 |
Target: 5'- -gGCUCugcaccGGgGCCGAAAGCgGCGUc -3' miRNA: 3'- cgCGAGuuc---UUgCGGCUUUCGgCGCA- -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 50626 | 0.67 | 0.688858 |
Target: 5'- uGCGCUCGgcgucgagcAGGucaACGCgGGugcuGGCUGCGUg -3' miRNA: 3'- -CGCGAGU---------UCU---UGCGgCUu---UCGGCGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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