Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 12336 | 5' | -54.3 | NC_003324.1 | + | 48770 | 0.66 | 0.757104 |
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Target: 5'- aGCGCUCAAGGuCGCCccuucguauuucuucGAcAAGCCGg-- -3' miRNA: 3'- -CGCGAGUUCUuGCGG---------------CU-UUCGGCgca -5' |
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| 12336 | 5' | -54.3 | NC_003324.1 | + | 12741 | 0.66 | 0.763279 |
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Target: 5'- uGCGUUCGccAG-ACGCCGAAAgGuuGuCGUa -3' miRNA: 3'- -CGCGAGU--UCuUGCGGCUUU-CggC-GCA- -5' |
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| 12336 | 5' | -54.3 | NC_003324.1 | + | 47794 | 0.66 | 0.763279 |
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Target: 5'- uGCGguuCUCAAGcagcauguCGUCGAggAGGCCGCGa -3' miRNA: 3'- -CGC---GAGUUCuu------GCGGCU--UUCGGCGCa -5' |
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| 12336 | 5' | -54.3 | NC_003324.1 | + | 33407 | 0.66 | 0.77346 |
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Target: 5'- aCGCUUGcgauGAACGCCc-GAGCCGCu- -3' miRNA: 3'- cGCGAGUu---CUUGCGGcuUUCGGCGca -5' |
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| 12336 | 5' | -54.3 | NC_003324.1 | + | 15664 | 0.66 | 0.782498 |
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Target: 5'- cGCGCUCGAuGACGC-GAucaaggcGGGCCaGCGa -3' miRNA: 3'- -CGCGAGUUcUUGCGgCU-------UUCGG-CGCa -5' |
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| 12336 | 5' | -54.3 | NC_003324.1 | + | 5174 | 0.66 | 0.783494 |
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Target: 5'- gGCGCagaucgUCGAucGCGCCGcuuaagcuaucAGGCCGCGUu -3' miRNA: 3'- -CGCG------AGUUcuUGCGGCu----------UUCGGCGCA- -5' |
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| 12336 | 5' | -54.3 | NC_003324.1 | + | 14468 | 0.66 | 0.793369 |
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Target: 5'- cGCGCUCGguugcGGcGCGuuGAuuggcagcAGCCGUGg -3' miRNA: 3'- -CGCGAGU-----UCuUGCggCUu-------UCGGCGCa -5' |
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| 12336 | 5' | -54.3 | NC_003324.1 | + | 18239 | 0.66 | 0.793369 |
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Target: 5'- gGCGgUCAGGuugccauCGaCGAcaGAGCCGCGa -3' miRNA: 3'- -CGCgAGUUCuu-----GCgGCU--UUCGGCGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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