Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 12336 | 5' | -54.3 | NC_003324.1 | + | 26407 | 0.74 | 0.343101 |
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Target: 5'- aUGCUCGAaccGGCGCUGAaagAAGCCGCGg -3' miRNA: 3'- cGCGAGUUc--UUGCGGCU---UUCGGCGCa -5' |
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| 12336 | 5' | -54.3 | NC_003324.1 | + | 17211 | 0.74 | 0.334877 |
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Target: 5'- gGCGUUCuuGAGCGCCGAGuuCCGCu- -3' miRNA: 3'- -CGCGAGuuCUUGCGGCUUucGGCGca -5' |
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| 12336 | 5' | -54.3 | NC_003324.1 | + | 2074 | 0.74 | 0.311077 |
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Target: 5'- aCGgUUGAGAACGUCGAgcgaAAGCCGUGUg -3' miRNA: 3'- cGCgAGUUCUUGCGGCU----UUCGGCGCA- -5' |
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| 12336 | 5' | -54.3 | NC_003324.1 | + | 11481 | 0.75 | 0.281377 |
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Target: 5'- uGCGgUCAAGAGCGCCGucGAGaCUGCa- -3' miRNA: 3'- -CGCgAGUUCUUGCGGCu-UUC-GGCGca -5' |
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| 12336 | 5' | -54.3 | NC_003324.1 | + | 1154 | 0.78 | 0.200329 |
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Target: 5'- aCGCUCGGGGcgaGCgGGAAGCCGCGa -3' miRNA: 3'- cGCGAGUUCUug-CGgCUUUCGGCGCa -5' |
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| 12336 | 5' | -54.3 | NC_003324.1 | + | 53393 | 0.78 | 0.195019 |
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Target: 5'- uGCGCUCAAcGGCGaCCGAuaguucuuucucAAGCCGCGa -3' miRNA: 3'- -CGCGAGUUcUUGC-GGCU------------UUCGGCGCa -5' |
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| 12336 | 5' | -54.3 | NC_003324.1 | + | 43795 | 0.78 | 0.189832 |
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Target: 5'- gGUGC-CGGGAACGCCGGcAAGgCGCGUg -3' miRNA: 3'- -CGCGaGUUCUUGCGGCU-UUCgGCGCA- -5' |
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| 12336 | 5' | -54.3 | NC_003324.1 | + | 17283 | 1.09 | 0.001391 |
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Target: 5'- gGCGCUCAAGAACGCCGAAAGCCGCGUc -3' miRNA: 3'- -CGCGAGUUCUUGCGGCUUUCGGCGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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