miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12345 3' -53 NC_003324.1 + 21638 1.12 0.001323
Target:  5'- cCAACGUCCAAAACCGCCUCGUCGCGCu -3'
miRNA:   3'- -GUUGCAGGUUUUGGCGGAGCAGCGCG- -5'
12345 3' -53 NC_003324.1 + 28624 0.84 0.106635
Target:  5'- uCGugGcCCGGAucguugcggGCCGCCUUGUCGCGCg -3'
miRNA:   3'- -GUugCaGGUUU---------UGGCGGAGCAGCGCG- -5'
12345 3' -53 NC_003324.1 + 19527 0.79 0.218227
Target:  5'- aGGCGUCCAucAGCCGCUUCa-CGCGCa -3'
miRNA:   3'- gUUGCAGGUu-UUGGCGGAGcaGCGCG- -5'
12345 3' -53 NC_003324.1 + 5590 0.77 0.290054
Target:  5'- gAGCGaUCCuuAcCCGCCuUCGUCGUGCg -3'
miRNA:   3'- gUUGC-AGGuuUuGGCGG-AGCAGCGCG- -5'
12345 3' -53 NC_003324.1 + 1761 0.75 0.370334
Target:  5'- uCAGCGUgCCAggacGAACCGCCgucagCGUCagcagGCGCa -3'
miRNA:   3'- -GUUGCA-GGU----UUUGGCGGa----GCAG-----CGCG- -5'
12345 3' -53 NC_003324.1 + 11716 0.75 0.38811
Target:  5'- uCGGCGUCa--GACCGCCgUCGUUcaaGCGCa -3'
miRNA:   3'- -GUUGCAGguuUUGGCGG-AGCAG---CGCG- -5'
12345 3' -53 NC_003324.1 + 31435 0.74 0.397205
Target:  5'- --cCGUCCGGcAACUGCCaUGUCGUGCu -3'
miRNA:   3'- guuGCAGGUU-UUGGCGGaGCAGCGCG- -5'
12345 3' -53 NC_003324.1 + 55405 0.74 0.406436
Target:  5'- uCAGCG-CCGAAGcCCGCCUugaacaguggCGUCGUGUg -3'
miRNA:   3'- -GUUGCaGGUUUU-GGCGGA----------GCAGCGCG- -5'
12345 3' -53 NC_003324.1 + 28882 0.74 0.415801
Target:  5'- uCAACGUCCcaccacuGGCCgGCCUCGUCcuuCGCu -3'
miRNA:   3'- -GUUGCAGGuu-----UUGG-CGGAGCAGc--GCG- -5'
12345 3' -53 NC_003324.1 + 15983 0.74 0.43492
Target:  5'- --uCGUUUu--GCCGCUUCGUCGCGUc -3'
miRNA:   3'- guuGCAGGuuuUGGCGGAGCAGCGCG- -5'
12345 3' -53 NC_003324.1 + 30256 0.73 0.454539
Target:  5'- gGGCGUCUucgaAGAAUUGCCgcagggCGUUGCGCa -3'
miRNA:   3'- gUUGCAGG----UUUUGGCGGa-----GCAGCGCG- -5'
12345 3' -53 NC_003324.1 + 1413 0.73 0.495148
Target:  5'- gGGCGUUCu---UCGCCUCGUCGaGCa -3'
miRNA:   3'- gUUGCAGGuuuuGGCGGAGCAGCgCG- -5'
12345 3' -53 NC_003324.1 + 31513 0.72 0.516064
Target:  5'- aAugGUCgCAGuccGCCGuCCUCGUCGUGa -3'
miRNA:   3'- gUugCAG-GUUu--UGGC-GGAGCAGCGCg -5'
12345 3' -53 NC_003324.1 + 23736 0.72 0.537326
Target:  5'- -cACGUCacgaAGAGCUGCgaCGUUGCGCc -3'
miRNA:   3'- guUGCAGg---UUUUGGCGgaGCAGCGCG- -5'
12345 3' -53 NC_003324.1 + 47634 0.71 0.569754
Target:  5'- aCGGCGaCC-GGGCCGCCaUCGUCGaGCu -3'
miRNA:   3'- -GUUGCaGGuUUUGGCGG-AGCAGCgCG- -5'
12345 3' -53 NC_003324.1 + 20749 0.71 0.580676
Target:  5'- aCGGCuUCCAAGcaucGCCGCCUgGUCGaaGCa -3'
miRNA:   3'- -GUUGcAGGUUU----UGGCGGAgCAGCg-CG- -5'
12345 3' -53 NC_003324.1 + 29793 0.71 0.602641
Target:  5'- uCGGCGUCCAca--CGCacaGUCGCGCc -3'
miRNA:   3'- -GUUGCAGGUuuugGCGgagCAGCGCG- -5'
12345 3' -53 NC_003324.1 + 12912 0.7 0.635755
Target:  5'- aCAGCGUCUgcGGAGCC-CCUUGcggCGCGUc -3'
miRNA:   3'- -GUUGCAGG--UUUUGGcGGAGCa--GCGCG- -5'
12345 3' -53 NC_003324.1 + 49579 0.7 0.635755
Target:  5'- ---aGUgCCAGAauGCCGcCCUCGUUGCGg -3'
miRNA:   3'- guugCA-GGUUU--UGGC-GGAGCAGCGCg -5'
12345 3' -53 NC_003324.1 + 17261 0.7 0.645696
Target:  5'- -cGCGUCCGAcaGACgcgccagCGCCUCGUCaauCGCu -3'
miRNA:   3'- guUGCAGGUU--UUG-------GCGGAGCAGc--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.