miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12345 3' -53 NC_003324.1 + 1413 0.73 0.495148
Target:  5'- gGGCGUUCu---UCGCCUCGUCGaGCa -3'
miRNA:   3'- gUUGCAGGuuuuGGCGGAGCAGCgCG- -5'
12345 3' -53 NC_003324.1 + 1761 0.75 0.370334
Target:  5'- uCAGCGUgCCAggacGAACCGCCgucagCGUCagcagGCGCa -3'
miRNA:   3'- -GUUGCA-GGU----UUUGGCGGa----GCAG-----CGCG- -5'
12345 3' -53 NC_003324.1 + 2627 0.68 0.754702
Target:  5'- aCGGCGUgCCGucuGCCGUC-CGUCGCc- -3'
miRNA:   3'- -GUUGCA-GGUuu-UGGCGGaGCAGCGcg -5'
12345 3' -53 NC_003324.1 + 4786 0.7 0.667738
Target:  5'- gGAUuUCCAGccAGCCGCCcuggucgUUGUUGCGCa -3'
miRNA:   3'- gUUGcAGGUU--UUGGCGG-------AGCAGCGCG- -5'
12345 3' -53 NC_003324.1 + 5590 0.77 0.290054
Target:  5'- gAGCGaUCCuuAcCCGCCuUCGUCGUGCg -3'
miRNA:   3'- gUUGC-AGGuuUuGGCGG-AGCAGCGCG- -5'
12345 3' -53 NC_003324.1 + 5816 0.66 0.841405
Target:  5'- aAACGguagCCGGuGCCGCCaacggagguuUCGgUUGCGCc -3'
miRNA:   3'- gUUGCa---GGUUuUGGCGG----------AGC-AGCGCG- -5'
12345 3' -53 NC_003324.1 + 5915 0.67 0.785141
Target:  5'- --gUGUCCGGAACCGCC-CGguaGUGa -3'
miRNA:   3'- guuGCAGGUUUUGGCGGaGCag-CGCg -5'
12345 3' -53 NC_003324.1 + 7750 0.69 0.701606
Target:  5'- -uAUGUCCgAGAGCaCGCCUCGcagggagGCGCg -3'
miRNA:   3'- guUGCAGG-UUUUG-GCGGAGCag-----CGCG- -5'
12345 3' -53 NC_003324.1 + 7796 0.67 0.804651
Target:  5'- -uGCGgCCGu-GCUGaCCUCGuUCGCGCc -3'
miRNA:   3'- guUGCaGGUuuUGGC-GGAGC-AGCGCG- -5'
12345 3' -53 NC_003324.1 + 8276 0.69 0.690736
Target:  5'- aCAACGUCCGuAGUCGUCgcCGUCGCaGCc -3'
miRNA:   3'- -GUUGCAGGUuUUGGCGGa-GCAGCG-CG- -5'
12345 3' -53 NC_003324.1 + 11716 0.75 0.38811
Target:  5'- uCGGCGUCa--GACCGCCgUCGUUcaaGCGCa -3'
miRNA:   3'- -GUUGCAGguuUUGGCGG-AGCAG---CGCG- -5'
12345 3' -53 NC_003324.1 + 12404 0.68 0.77514
Target:  5'- aCAAUGU-CGGAGCCGa--CGUUGCGCg -3'
miRNA:   3'- -GUUGCAgGUUUUGGCggaGCAGCGCG- -5'
12345 3' -53 NC_003324.1 + 12912 0.7 0.635755
Target:  5'- aCAGCGUCUgcGGAGCC-CCUUGcggCGCGUc -3'
miRNA:   3'- -GUUGCAGG--UUUUGGcGGAGCa--GCGCG- -5'
12345 3' -53 NC_003324.1 + 13983 0.67 0.794981
Target:  5'- aCAACG-CUAuAACgGgC-CGUCGCGCa -3'
miRNA:   3'- -GUUGCaGGUuUUGgCgGaGCAGCGCG- -5'
12345 3' -53 NC_003324.1 + 14454 0.69 0.723129
Target:  5'- cCGGCGUCCAAgcaucggcgGACCuuGCUggcacCGUCGCGg -3'
miRNA:   3'- -GUUGCAGGUU---------UUGG--CGGa----GCAGCGCg -5'
12345 3' -53 NC_003324.1 + 14607 0.7 0.65783
Target:  5'- gAGCG-CCAG---CGCCUUGUCGCGg -3'
miRNA:   3'- gUUGCaGGUUuugGCGGAGCAGCGCg -5'
12345 3' -53 NC_003324.1 + 15983 0.74 0.43492
Target:  5'- --uCGUUUu--GCCGCUUCGUCGCGUc -3'
miRNA:   3'- guuGCAGGuuuUGGCGGAGCAGCGCG- -5'
12345 3' -53 NC_003324.1 + 16034 0.68 0.77514
Target:  5'- cCAACGcCC---ACCGCCUUGUCGa-- -3'
miRNA:   3'- -GUUGCaGGuuuUGGCGGAGCAGCgcg -5'
12345 3' -53 NC_003324.1 + 16304 0.67 0.823433
Target:  5'- -cGCGUCggCAcgGCCuGCCcCGUCGCGg -3'
miRNA:   3'- guUGCAG--GUuuUGG-CGGaGCAGCGCg -5'
12345 3' -53 NC_003324.1 + 17108 0.7 0.646799
Target:  5'- uGAUGUCCucGAUCGCCUCa-CGgGCg -3'
miRNA:   3'- gUUGCAGGuuUUGGCGGAGcaGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.