miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12345 3' -53 NC_003324.1 + 41291 0.67 0.804651
Target:  5'- uCGACGUCCAucAAGCCgugcgGCCUUuccaUCGCGa -3'
miRNA:   3'- -GUUGCAGGU--UUUGG-----CGGAGc---AGCGCg -5'
12345 3' -53 NC_003324.1 + 39018 0.7 0.668837
Target:  5'- uGACGaUCUucu-CCGCCuUCGUCGgGCu -3'
miRNA:   3'- gUUGC-AGGuuuuGGCGG-AGCAGCgCG- -5'
12345 3' -53 NC_003324.1 + 8276 0.69 0.690736
Target:  5'- aCAACGUCCGuAGUCGUCgcCGUCGCaGCc -3'
miRNA:   3'- -GUUGCAGGUuUUGGCGGa-GCAGCG-CG- -5'
12345 3' -53 NC_003324.1 + 7750 0.69 0.701606
Target:  5'- -uAUGUCCgAGAGCaCGCCUCGcagggagGCGCg -3'
miRNA:   3'- guUGCAGG-UUUUG-GCGGAGCag-----CGCG- -5'
12345 3' -53 NC_003324.1 + 14454 0.69 0.723129
Target:  5'- cCGGCGUCCAAgcaucggcgGACCuuGCUggcacCGUCGCGg -3'
miRNA:   3'- -GUUGCAGGUU---------UUGG--CGGa----GCAGCGCg -5'
12345 3' -53 NC_003324.1 + 34093 0.68 0.754702
Target:  5'- --cUGUCCAugAGACCGagUCGaacUCGCGCa -3'
miRNA:   3'- guuGCAGGU--UUUGGCggAGC---AGCGCG- -5'
12345 3' -53 NC_003324.1 + 21299 0.68 0.754702
Target:  5'- -cGCGUUC---GCCGCCUCGcCG-GCg -3'
miRNA:   3'- guUGCAGGuuuUGGCGGAGCaGCgCG- -5'
12345 3' -53 NC_003324.1 + 13983 0.67 0.794981
Target:  5'- aCAACG-CUAuAACgGgC-CGUCGCGCa -3'
miRNA:   3'- -GUUGCaGGUuUUGgCgGaGCAGCGCG- -5'
12345 3' -53 NC_003324.1 + 31336 0.67 0.804651
Target:  5'- aAGCGUugcaucgaucCCAGGAugcCCGCCUCGUCaucUGCa -3'
miRNA:   3'- gUUGCA----------GGUUUU---GGCGGAGCAGc--GCG- -5'
12345 3' -53 NC_003324.1 + 31237 0.7 0.65783
Target:  5'- cCAGCG-CCAGcGCCGCCggcCGcacUGCGCg -3'
miRNA:   3'- -GUUGCaGGUUuUGGCGGa--GCa--GCGCG- -5'
12345 3' -53 NC_003324.1 + 17108 0.7 0.646799
Target:  5'- uGAUGUCCucGAUCGCCUCa-CGgGCg -3'
miRNA:   3'- gUUGCAGGuuUUGGCGGAGcaGCgCG- -5'
12345 3' -53 NC_003324.1 + 29793 0.71 0.602641
Target:  5'- uCGGCGUCCAca--CGCacaGUCGCGCc -3'
miRNA:   3'- -GUUGCAGGUuuugGCGgagCAGCGCG- -5'
12345 3' -53 NC_003324.1 + 19527 0.79 0.218227
Target:  5'- aGGCGUCCAucAGCCGCUUCa-CGCGCa -3'
miRNA:   3'- gUUGCAGGUu-UUGGCGGAGcaGCGCG- -5'
12345 3' -53 NC_003324.1 + 31435 0.74 0.397205
Target:  5'- --cCGUCCGGcAACUGCCaUGUCGUGCu -3'
miRNA:   3'- guuGCAGGUU-UUGGCGGaGCAGCGCG- -5'
12345 3' -53 NC_003324.1 + 55405 0.74 0.406436
Target:  5'- uCAGCG-CCGAAGcCCGCCUugaacaguggCGUCGUGUg -3'
miRNA:   3'- -GUUGCaGGUUUU-GGCGGA----------GCAGCGCG- -5'
12345 3' -53 NC_003324.1 + 28882 0.74 0.415801
Target:  5'- uCAACGUCCcaccacuGGCCgGCCUCGUCcuuCGCu -3'
miRNA:   3'- -GUUGCAGGuu-----UUGG-CGGAGCAGc--GCG- -5'
12345 3' -53 NC_003324.1 + 1413 0.73 0.495148
Target:  5'- gGGCGUUCu---UCGCCUCGUCGaGCa -3'
miRNA:   3'- gUUGCAGGuuuuGGCGGAGCAGCgCG- -5'
12345 3' -53 NC_003324.1 + 31513 0.72 0.516064
Target:  5'- aAugGUCgCAGuccGCCGuCCUCGUCGUGa -3'
miRNA:   3'- gUugCAG-GUUu--UGGC-GGAGCAGCGCg -5'
12345 3' -53 NC_003324.1 + 23736 0.72 0.537326
Target:  5'- -cACGUCacgaAGAGCUGCgaCGUUGCGCc -3'
miRNA:   3'- guUGCAGg---UUUUGGCGgaGCAGCGCG- -5'
12345 3' -53 NC_003324.1 + 47634 0.71 0.569754
Target:  5'- aCGGCGaCC-GGGCCGCCaUCGUCGaGCu -3'
miRNA:   3'- -GUUGCaGGuUUUGGCGG-AGCAGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.