miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12353 3' -54.7 NC_003324.1 + 37466 0.67 0.685838
Target:  5'- gGAGCcgGGGUcuCCGGGAUGGgCGACUg -3'
miRNA:   3'- gCUCG--UCUAacGGUUCUGCCgGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 22678 0.67 0.685838
Target:  5'- aCGcGGCAGGcaGCCAaaAGGCcGCCGAUCu -3'
miRNA:   3'- -GC-UCGUCUaaCGGU--UCUGcCGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 30808 0.68 0.674959
Target:  5'- cCGAGCAGc------AGGCGGCCGACg -3'
miRNA:   3'- -GCUCGUCuaacgguUCUGCCGGCUGg -5'
12353 3' -54.7 NC_003324.1 + 39834 0.68 0.674959
Target:  5'- uCGAGCAcg-UGCCGccGGACaccaaGGCCG-CCa -3'
miRNA:   3'- -GCUCGUcuaACGGU--UCUG-----CCGGCuGG- -5'
12353 3' -54.7 NC_003324.1 + 15591 0.68 0.674959
Target:  5'- -cGGCAGA-UGCCAAGGCGGgagcgaGGCUu -3'
miRNA:   3'- gcUCGUCUaACGGUUCUGCCgg----CUGG- -5'
12353 3' -54.7 NC_003324.1 + 20492 0.68 0.664041
Target:  5'- gGAGCGGGaugUUGCgAuugagcgaGGGCGugcccGCCGACCg -3'
miRNA:   3'- gCUCGUCU---AACGgU--------UCUGC-----CGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 53110 0.68 0.653093
Target:  5'- uGAGCAcg--GCC-AGACGGucuggcuccCCGACCg -3'
miRNA:   3'- gCUCGUcuaaCGGuUCUGCC---------GGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 32215 0.68 0.653093
Target:  5'- gGGGCGGcccgGcCCGAGGCGGa-GACCa -3'
miRNA:   3'- gCUCGUCuaa-C-GGUUCUGCCggCUGG- -5'
12353 3' -54.7 NC_003324.1 + 16116 0.68 0.649804
Target:  5'- gCGAGguGGUccUGCgCAGGGCgcuucgguagcgggGGCCGcGCCa -3'
miRNA:   3'- -GCUCguCUA--ACG-GUUCUG--------------CCGGC-UGG- -5'
12353 3' -54.7 NC_003324.1 + 12795 0.68 0.642126
Target:  5'- aCGAGCGca---CUAAGaACGGCUGACCa -3'
miRNA:   3'- -GCUCGUcuaacGGUUC-UGCCGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 38006 0.68 0.642126
Target:  5'- gGAGCGG-UUGCggcgcaCGGGGCGcgucaacauuccGCCGACCg -3'
miRNA:   3'- gCUCGUCuAACG------GUUCUGC------------CGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 24556 0.68 0.642126
Target:  5'- aGAGCAG--UGCCGgaAGaucgucaccgcuGCGGgCGACCa -3'
miRNA:   3'- gCUCGUCuaACGGU--UC------------UGCCgGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 48176 0.68 0.63115
Target:  5'- uCGAGCAGca-GCCAcGuCGGCgCGAUCc -3'
miRNA:   3'- -GCUCGUCuaaCGGUuCuGCCG-GCUGG- -5'
12353 3' -54.7 NC_003324.1 + 16805 0.68 0.63115
Target:  5'- cCGGGCAGAUUGCCcAGcGCuGCauCGACa -3'
miRNA:   3'- -GCUCGUCUAACGGuUC-UGcCG--GCUGg -5'
12353 3' -54.7 NC_003324.1 + 20787 0.68 0.620174
Target:  5'- --cGcCGGAacgUUGgCGAGGCGGCgGACCg -3'
miRNA:   3'- gcuC-GUCU---AACgGUUCUGCCGgCUGG- -5'
12353 3' -54.7 NC_003324.1 + 32177 0.68 0.620174
Target:  5'- -cAGguGAUUGCCGAcGCGcGUCGugCg -3'
miRNA:   3'- gcUCguCUAACGGUUcUGC-CGGCugG- -5'
12353 3' -54.7 NC_003324.1 + 24138 0.69 0.609209
Target:  5'- gCGAGaAGGUaaagcccgccagUGCCGAGAaGGCCG-CCa -3'
miRNA:   3'- -GCUCgUCUA------------ACGGUUCUgCCGGCuGG- -5'
12353 3' -54.7 NC_003324.1 + 28112 0.69 0.609209
Target:  5'- cCGGGUucucgaucgAGAUauccaacccGCCAAGgcggauGCGGCCGACCu -3'
miRNA:   3'- -GCUCG---------UCUAa--------CGGUUC------UGCCGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 25696 0.69 0.598264
Target:  5'- -cAGCAGccgUGCCGgcgcAGcaGCGGCCGACa -3'
miRNA:   3'- gcUCGUCua-ACGGU----UC--UGCCGGCUGg -5'
12353 3' -54.7 NC_003324.1 + 18370 0.69 0.587347
Target:  5'- gGGGCAgcGAUUGCCc--GCGcGUCGGCCg -3'
miRNA:   3'- gCUCGU--CUAACGGuucUGC-CGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.