miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12354 5' -57 NC_003324.1 + 29035 0.66 0.629832
Target:  5'- -aACGAgcgcuugcuCAAGCAGCGCCaggcGgCACgCUCAa -3'
miRNA:   3'- gaUGCU---------GUUCGUCGCGG----CgGUG-GAGU- -5'
12354 5' -57 NC_003324.1 + 44673 0.66 0.629832
Target:  5'- uCUGCaACGGGCAGUuccucGCCGCCGugUCGc -3'
miRNA:   3'- -GAUGcUGUUCGUCG-----CGGCGGUggAGU- -5'
12354 5' -57 NC_003324.1 + 13512 0.66 0.629832
Target:  5'- -cGCGGC-GGCGGUGCacuggaCACCUCAg -3'
miRNA:   3'- gaUGCUGuUCGUCGCGgcg---GUGGAGU- -5'
12354 5' -57 NC_003324.1 + 30606 0.66 0.618896
Target:  5'- -aGCGGCAgcGGCAGCgaagGUCGCCACg--- -3'
miRNA:   3'- gaUGCUGU--UCGUCG----CGGCGGUGgagu -5'
12354 5' -57 NC_003324.1 + 37487 0.66 0.618896
Target:  5'- -gGCGACuGGUAGCGCuucuugcgcaCGCUACCa-- -3'
miRNA:   3'- gaUGCUGuUCGUCGCG----------GCGGUGGagu -5'
12354 5' -57 NC_003324.1 + 16992 0.66 0.607971
Target:  5'- --gUGACGcuGGCA--GCCGCCACCUUg -3'
miRNA:   3'- gauGCUGU--UCGUcgCGGCGGUGGAGu -5'
12354 5' -57 NC_003324.1 + 7361 0.66 0.607971
Target:  5'- uCUGCGugAuguAGCgAGCGaCCGUgAUCUCGg -3'
miRNA:   3'- -GAUGCugU---UCG-UCGC-GGCGgUGGAGU- -5'
12354 5' -57 NC_003324.1 + 53610 0.66 0.607971
Target:  5'- aCU-CGACGAGCuGCGCgacgaacguCGCCGgCUCc -3'
miRNA:   3'- -GAuGCUGUUCGuCGCG---------GCGGUgGAGu -5'
12354 5' -57 NC_003324.1 + 42288 0.66 0.607971
Target:  5'- --uCGGCAAcGCugaguGCGCCGCCugC-CAc -3'
miRNA:   3'- gauGCUGUU-CGu----CGCGGCGGugGaGU- -5'
12354 5' -57 NC_003324.1 + 15223 0.66 0.607971
Target:  5'- -gGCGGCGAGCcuuuucacguGGCGCCGUgucgaCGCCg-- -3'
miRNA:   3'- gaUGCUGUUCG----------UCGCGGCG-----GUGGagu -5'
12354 5' -57 NC_003324.1 + 30466 0.66 0.60688
Target:  5'- -aACGuuGCGGGUcgaaucGGCGCCGCCGagcaggcCCUCGg -3'
miRNA:   3'- gaUGC--UGUUCG------UCGCGGCGGU-------GGAGU- -5'
12354 5' -57 NC_003324.1 + 40640 0.66 0.597068
Target:  5'- -gACGACAcGGUAGUGCCGaucgaaaaCCACCa-- -3'
miRNA:   3'- gaUGCUGU-UCGUCGCGGC--------GGUGGagu -5'
12354 5' -57 NC_003324.1 + 15909 0.66 0.597068
Target:  5'- -gGCGAUAgucuucGGCAGCuCgGCCGCCUgAa -3'
miRNA:   3'- gaUGCUGU------UCGUCGcGgCGGUGGAgU- -5'
12354 5' -57 NC_003324.1 + 47633 0.66 0.597068
Target:  5'- -gACGGCGAcCGG-GCCGCCAUCgUCGa -3'
miRNA:   3'- gaUGCUGUUcGUCgCGGCGGUGG-AGU- -5'
12354 5' -57 NC_003324.1 + 18626 0.66 0.597068
Target:  5'- gUGCGACGAgaacacccGCAGCGC-GUCGCCa-- -3'
miRNA:   3'- gAUGCUGUU--------CGUCGCGgCGGUGGagu -5'
12354 5' -57 NC_003324.1 + 44918 0.66 0.590539
Target:  5'- -cACGGCA-GCAGCgggcacgccaaugacGCCGCCcCCUUc -3'
miRNA:   3'- gaUGCUGUuCGUCG---------------CGGCGGuGGAGu -5'
12354 5' -57 NC_003324.1 + 53055 0.66 0.586194
Target:  5'- -gGCGGCAGGUcGCGCucgucucggcgCGUCACCUUu -3'
miRNA:   3'- gaUGCUGUUCGuCGCG-----------GCGGUGGAGu -5'
12354 5' -57 NC_003324.1 + 31842 0.67 0.575357
Target:  5'- --cCGGCAGGCguuGGCGCCcCCAgUUCAa -3'
miRNA:   3'- gauGCUGUUCG---UCGCGGcGGUgGAGU- -5'
12354 5' -57 NC_003324.1 + 3925 0.67 0.564567
Target:  5'- -cAUGACGuGCGGCucaacgaaggaGCC-CCACCUCAu -3'
miRNA:   3'- gaUGCUGUuCGUCG-----------CGGcGGUGGAGU- -5'
12354 5' -57 NC_003324.1 + 24180 0.67 0.564567
Target:  5'- aCUACGACAAGgguauCAGCGCCaccguggcgcaGCgCACCg-- -3'
miRNA:   3'- -GAUGCUGUUC-----GUCGCGG-----------CG-GUGGagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.