miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12355 5' -52.8 NC_003324.1 + 40148 0.68 0.729994
Target:  5'- cGCCG---CGUUCcgGCCAGAccCGCGCa -3'
miRNA:   3'- aCGGCuuaGCAGG--UGGUCUuuGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 17271 0.72 0.511109
Target:  5'- cGCCGAAagccgCGUCCGaCAGA--CGCGCc -3'
miRNA:   3'- aCGGCUUa----GCAGGUgGUCUuuGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 23843 0.68 0.751135
Target:  5'- cGCCGAAUCGgaccCCGauuuCCGGcgcAACGuCGCa -3'
miRNA:   3'- aCGGCUUAGCa---GGU----GGUCu--UUGC-GCG- -5'
12355 5' -52.8 NC_003324.1 + 12603 0.66 0.872514
Target:  5'- cGUCGccUCGaacugCCACCAGcccgucguuGGACGCGUa -3'
miRNA:   3'- aCGGCuuAGCa----GGUGGUC---------UUUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 31344 0.72 0.543192
Target:  5'- aGCCG--UCG-CCGCCGcaaAAACGCGCa -3'
miRNA:   3'- aCGGCuuAGCaGGUGGUc--UUUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 21356 0.7 0.629034
Target:  5'- gGCCGAgaugaaagcggcagcGUCGggcaaUCCGCUcauccuggaagagauGGAAACGCGCc -3'
miRNA:   3'- aCGGCU---------------UAGC-----AGGUGG---------------UCUUUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 29994 0.74 0.439672
Target:  5'- gGCCGcgcCGUCCagcaugGCCAGcAGCGCGCc -3'
miRNA:   3'- aCGGCuuaGCAGG------UGGUCuUUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 38162 0.8 0.187317
Target:  5'- cGCCGAcgCGcUUCGCCAGAAG-GCGCa -3'
miRNA:   3'- aCGGCUuaGC-AGGUGGUCUUUgCGCG- -5'
12355 5' -52.8 NC_003324.1 + 2755 0.66 0.872514
Target:  5'- uUGCCGAAgCGgCCACCgcgcuGGAAGgGCa- -3'
miRNA:   3'- -ACGGCUUaGCaGGUGG-----UCUUUgCGcg -5'
12355 5' -52.8 NC_003324.1 + 38119 0.66 0.872514
Target:  5'- cGCCGucucguGUCGgUCGgCGGAauguuGACGCGCc -3'
miRNA:   3'- aCGGCu-----UAGCaGGUgGUCU-----UUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 27951 0.66 0.864457
Target:  5'- gGCCGGcuaCG-CCAgCGaggacGAAGCGCGCg -3'
miRNA:   3'- aCGGCUua-GCaGGUgGU-----CUUUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 34701 0.66 0.856153
Target:  5'- cGCCGAGgugCGcaaaCugCAGA-GCGCGUc -3'
miRNA:   3'- aCGGCUUa--GCag--GugGUCUuUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 19864 0.66 0.864457
Target:  5'- cUGUCGu-UCGUCCagaaaaugccGCCGGggGaCGCGa -3'
miRNA:   3'- -ACGGCuuAGCAGG----------UGGUCuuU-GCGCg -5'
12355 5' -52.8 NC_003324.1 + 22142 0.72 0.532418
Target:  5'- uUGCCGucGUCGUCCGCCucgccGACGC-Cg -3'
miRNA:   3'- -ACGGCu-UAGCAGGUGGucu--UUGCGcG- -5'
12355 5' -52.8 NC_003324.1 + 11443 0.67 0.811225
Target:  5'- aUGUCaGAugGUC-UCCACUGGAA-CGCGCa -3'
miRNA:   3'- -ACGG-CU--UAGcAGGUGGUCUUuGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 25113 0.67 0.795777
Target:  5'- cGCCGGGguagagguucuuggCGaugCCGCCGGuGACGCGa -3'
miRNA:   3'- aCGGCUUa-------------GCa--GGUGGUCuUUGCGCg -5'
12355 5' -52.8 NC_003324.1 + 42295 0.67 0.791843
Target:  5'- cGCUGAGUgCG-CCGCCuGccACGUGCc -3'
miRNA:   3'- aCGGCUUA-GCaGGUGGuCuuUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 20997 0.67 0.791843
Target:  5'- cGUCGGAUCG-CCGCaauGAuggcCGCGCc -3'
miRNA:   3'- aCGGCUUAGCaGGUGgu-CUuu--GCGCG- -5'
12355 5' -52.8 NC_003324.1 + 38256 0.7 0.631256
Target:  5'- aUGCCG-AUCG-CCAUCAGGucgggagUGCGCg -3'
miRNA:   3'- -ACGGCuUAGCaGGUGGUCUuu-----GCGCG- -5'
12355 5' -52.8 NC_003324.1 + 43083 0.7 0.631256
Target:  5'- cGCCGAgaauGUCGUCuCGCCAuccgccAGCGgGCa -3'
miRNA:   3'- aCGGCU----UAGCAG-GUGGUcu----UUGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.