Results 1 - 20 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12358 | 3' | -57.3 | NC_003324.1 | + | 27150 | 1.09 | 0.000763 |
Target: 5'- gCCGCACCGGCCACAACGGUAACGCCGc -3' miRNA: 3'- -GGCGUGGCCGGUGUUGCCAUUGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 23401 | 0.78 | 0.143127 |
Target: 5'- aCGCGCUcggcuuucucguuGGCCGCGuCGGUGGCGCCc -3' miRNA: 3'- gGCGUGG-------------CCGGUGUuGCCAUUGCGGc -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 14564 | 0.78 | 0.125394 |
Target: 5'- gCUGCACCGGCUuccGCGACGGUGccagcaaggucCGCCGa -3' miRNA: 3'- -GGCGUGGCCGG---UGUUGCCAUu----------GCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 24657 | 0.77 | 0.151408 |
Target: 5'- cCUGCGCUGGucgcCCGCAGCGGUGACGaucuuCCGg -3' miRNA: 3'- -GGCGUGGCC----GGUGUUGCCAUUGC-----GGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 30074 | 0.76 | 0.182232 |
Target: 5'- gCGaCACCGGCCGCuGCGGcuuccucGACGCCu -3' miRNA: 3'- gGC-GUGGCCGGUGuUGCCa------UUGCGGc -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 26116 | 0.76 | 0.172898 |
Target: 5'- -aGCGCCGGCa--GAcCGGUGACGCCa -3' miRNA: 3'- ggCGUGGCCGgugUU-GCCAUUGCGGc -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 23995 | 0.75 | 0.212948 |
Target: 5'- aCGCGCUGGUaggGCGGCGGUAGgGCUGc -3' miRNA: 3'- gGCGUGGCCGg--UGUUGCCAUUgCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 35191 | 0.74 | 0.254296 |
Target: 5'- aCgGCGCUGGCgACGACGGaaaggcagaUGAUGCCa -3' miRNA: 3'- -GgCGUGGCCGgUGUUGCC---------AUUGCGGc -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 16328 | 0.74 | 0.229914 |
Target: 5'- aCGCAgCGGuCCGCGACGGcguUGCCGu -3' miRNA: 3'- gGCGUgGCC-GGUGUUGCCauuGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 5876 | 0.74 | 0.241849 |
Target: 5'- aCCGCAcCCGGCCuuggggAUGACGGccuGCGCCu -3' miRNA: 3'- -GGCGU-GGCCGG------UGUUGCCau-UGCGGc -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 33382 | 0.73 | 0.280761 |
Target: 5'- gCGCAacuCCGGCCACuGGCGGagAACGCUu -3' miRNA: 3'- gGCGU---GGCCGGUG-UUGCCa-UUGCGGc -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 47943 | 0.73 | 0.267264 |
Target: 5'- cCUGaCGCCGGUCAgguacgguuuCAGCGGcAGCGCCGc -3' miRNA: 3'- -GGC-GUGGCCGGU----------GUUGCCaUUGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 4933 | 0.73 | 0.28771 |
Target: 5'- cUCG-ACCGGCCGCAACGuUGuUGCCGg -3' miRNA: 3'- -GGCgUGGCCGGUGUUGCcAUuGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 30335 | 0.72 | 0.316857 |
Target: 5'- cCCGCAUCaucgccgauGGUguCGGCGGUGGCGUCGc -3' miRNA: 3'- -GGCGUGG---------CCGguGUUGCCAUUGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 11465 | 0.72 | 0.340142 |
Target: 5'- aCGCGCagGGgCACAuuGCGGUcaagAGCGCCGu -3' miRNA: 3'- gGCGUGg-CCgGUGU--UGCCA----UUGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 38991 | 0.72 | 0.332244 |
Target: 5'- cCUGCGCa-GCCGCAGCGaGUGA-GCCGg -3' miRNA: 3'- -GGCGUGgcCGGUGUUGC-CAUUgCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 35497 | 0.72 | 0.332244 |
Target: 5'- gCCGUACCGGCUGCuuCc--AGCGCCGa -3' miRNA: 3'- -GGCGUGGCCGGUGuuGccaUUGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 48444 | 0.72 | 0.324483 |
Target: 5'- -aGCGCCGcGCCGagaaGAUGGUGcGCGCCa -3' miRNA: 3'- ggCGUGGC-CGGUg---UUGCCAU-UGCGGc -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 17767 | 0.72 | 0.324483 |
Target: 5'- cCCGcCAUCagGGCCAuCAugcCGGUGAUGCCGg -3' miRNA: 3'- -GGC-GUGG--CCGGU-GUu--GCCAUUGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 35322 | 0.72 | 0.302013 |
Target: 5'- uUGCGCCGGCUGCuGCGGU--UGCUGu -3' miRNA: 3'- gGCGUGGCCGGUGuUGCCAuuGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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