miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12364 5' -62.3 NC_003324.1 + 11842 0.66 0.393724
Target:  5'- uGUCCuGCgCGAcCGGGC-CGGGCaCGGCa -3'
miRNA:   3'- -UAGG-CG-GCUaGCUCGcGCUCGgGCCG- -5'
12364 5' -62.3 NC_003324.1 + 43718 0.66 0.39286
Target:  5'- -aCCGCCugcugccaaucggGAUCaGGGuCGCGAcugugaaagGCCCGGUa -3'
miRNA:   3'- uaGGCGG-------------CUAG-CUC-GCGCU---------CGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 32108 0.66 0.388561
Target:  5'- -gUCGCCGGUgaggcCGAGUGCcuuggucuccgccucGGGCCgGGCc -3'
miRNA:   3'- uaGGCGGCUA-----GCUCGCG---------------CUCGGgCCG- -5'
12364 5' -62.3 NC_003324.1 + 54609 0.66 0.388561
Target:  5'- --aCGUCGAUCGAGCaagaucgaaagacuCGAggacgugcGCCCGGCu -3'
miRNA:   3'- uagGCGGCUAGCUCGc-------------GCU--------CGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 16241 0.66 0.385144
Target:  5'- -cCCGCC--UCGGuGCcaGCGAuGCCUGGCg -3'
miRNA:   3'- uaGGCGGcuAGCU-CG--CGCU-CGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 48434 0.66 0.385144
Target:  5'- ---aGCCGGcuUgGAGUGCGAGCaCGGUg -3'
miRNA:   3'- uaggCGGCU--AgCUCGCGCUCGgGCCG- -5'
12364 5' -62.3 NC_003324.1 + 14072 0.66 0.384293
Target:  5'- gAUCCGCaGAUCGgcaaagcAGCGCucaaggaagcgGAGaCCGGCg -3'
miRNA:   3'- -UAGGCGgCUAGC-------UCGCG-----------CUCgGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 40516 0.66 0.376689
Target:  5'- -cCCGauggagccaCGAUCGAGCGCGgcgagaAGCCUcuGGUg -3'
miRNA:   3'- uaGGCg--------GCUAGCUCGCGC------UCGGG--CCG- -5'
12364 5' -62.3 NC_003324.1 + 48184 0.66 0.368361
Target:  5'- aGUCCGCU--UCGAGCaGC-AGCCacguCGGCg -3'
miRNA:   3'- -UAGGCGGcuAGCUCG-CGcUCGG----GCCG- -5'
12364 5' -62.3 NC_003324.1 + 45974 0.66 0.368361
Target:  5'- --gCGCCGaAUCGAGgaGCGuGCCCGa- -3'
miRNA:   3'- uagGCGGC-UAGCUCg-CGCuCGGGCcg -5'
12364 5' -62.3 NC_003324.1 + 43687 0.66 0.360159
Target:  5'- uGUCCGagCaGUCGAGCGCGAccGCCaaguaucaGGCc -3'
miRNA:   3'- -UAGGCg-GcUAGCUCGCGCU--CGGg-------CCG- -5'
12364 5' -62.3 NC_003324.1 + 26133 0.66 0.352086
Target:  5'- ---aGCCGcgcUUGAGCuaGAGCgCCGGCa -3'
miRNA:   3'- uaggCGGCu--AGCUCGcgCUCG-GGCCG- -5'
12364 5' -62.3 NC_003324.1 + 29666 0.66 0.352086
Target:  5'- uUCUGcCCGAggaaUCGAGCGaCGAGgCCUugaGGCc -3'
miRNA:   3'- uAGGC-GGCU----AGCUCGC-GCUC-GGG---CCG- -5'
12364 5' -62.3 NC_003324.1 + 16522 0.67 0.344142
Target:  5'- ---aGCgGAUCGGccuGUGCGuGCUCGGCg -3'
miRNA:   3'- uaggCGgCUAGCU---CGCGCuCGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 18272 0.67 0.344142
Target:  5'- -aCCGCUGAcggaaUCGGccgacGCGCGGGCaaucgcugccCCGGCc -3'
miRNA:   3'- uaGGCGGCU-----AGCU-----CGCGCUCG----------GGCCG- -5'
12364 5' -62.3 NC_003324.1 + 21401 0.67 0.344142
Target:  5'- cGUCCGCgcAUCGAGCGUGuuCuuGGUg -3'
miRNA:   3'- -UAGGCGgcUAGCUCGCGCucGggCCG- -5'
12364 5' -62.3 NC_003324.1 + 53654 0.67 0.336327
Target:  5'- -aCCGCCGugcggcaccuUgGAGCGcCGAGCUugauaCGGCg -3'
miRNA:   3'- uaGGCGGCu---------AgCUCGC-GCUCGG-----GCCG- -5'
12364 5' -62.3 NC_003324.1 + 40330 0.67 0.328643
Target:  5'- -aCCGCaCGcaaggcggcaGUCGAGCGgGAGCCa-GCa -3'
miRNA:   3'- uaGGCG-GC----------UAGCUCGCgCUCGGgcCG- -5'
12364 5' -62.3 NC_003324.1 + 19926 0.67 0.328643
Target:  5'- aAUUCGCCGGUCuGAuaGaCGAGCCCaGUc -3'
miRNA:   3'- -UAGGCGGCUAG-CUcgC-GCUCGGGcCG- -5'
12364 5' -62.3 NC_003324.1 + 24276 0.67 0.313666
Target:  5'- uUCuCGUCGAUCuGGGCacgGCgGAGCuuGGCg -3'
miRNA:   3'- uAG-GCGGCUAG-CUCG---CG-CUCGggCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.