miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12366 5' -57.5 NC_003324.1 + 13095 0.66 0.6505
Target:  5'- gGCGGGcGUUGAugcCGCCcugcaGAUCGCcaGCCGc -3'
miRNA:   3'- -CGUCCuCAACUu--GCGG-----CUGGCG--CGGC- -5'
12366 5' -57.5 NC_003324.1 + 13072 0.66 0.6505
Target:  5'- uGCAGccGGUaccgccgcCGCCGACCGCcGCCGa -3'
miRNA:   3'- -CGUCc-UCAacuu----GCGGCUGGCG-CGGC- -5'
12366 5' -57.5 NC_003324.1 + 14990 0.66 0.6505
Target:  5'- gGCAuGuuGUUGAccGCGUCGAgCGCGUCGc -3'
miRNA:   3'- -CGU-CcuCAACU--UGCGGCUgGCGCGGC- -5'
12366 5' -57.5 NC_003324.1 + 27203 0.66 0.6505
Target:  5'- aCGGGcucaaGAGCGagagCGACCGCGCUGg -3'
miRNA:   3'- cGUCCucaa-CUUGCg---GCUGGCGCGGC- -5'
12366 5' -57.5 NC_003324.1 + 48696 0.66 0.629057
Target:  5'- aGCcGGAugcGGGCGCCGACCugcGUGUCGa -3'
miRNA:   3'- -CGuCCUcaaCUUGCGGCUGG---CGCGGC- -5'
12366 5' -57.5 NC_003324.1 + 18174 0.66 0.627984
Target:  5'- -uGGGGGUcaucucgUGGAUGuUCcACCGCGCCGa -3'
miRNA:   3'- cgUCCUCA-------ACUUGC-GGcUGGCGCGGC- -5'
12366 5' -57.5 NC_003324.1 + 52796 0.66 0.627984
Target:  5'- uCAGGcaccgauAGUgcugaUGGACGCgagGAUCGCGCCGg -3'
miRNA:   3'- cGUCC-------UCA-----ACUUGCGg--CUGGCGCGGC- -5'
12366 5' -57.5 NC_003324.1 + 8315 0.66 0.607623
Target:  5'- cGCAGG-GU--AACGCCGuCgGCGCuCGu -3'
miRNA:   3'- -CGUCCuCAacUUGCGGCuGgCGCG-GC- -5'
12366 5' -57.5 NC_003324.1 + 30662 0.66 0.607623
Target:  5'- --cGGAGauagcuGCGCgGAUCGCGCCa -3'
miRNA:   3'- cguCCUCaacu--UGCGgCUGGCGCGGc -5'
12366 5' -57.5 NC_003324.1 + 30576 0.66 0.607623
Target:  5'- cGCAGGcgcAGUUuccGAGgGCCugcucGGCgGCGCCGa -3'
miRNA:   3'- -CGUCC---UCAA---CUUgCGG-----CUGgCGCGGC- -5'
12366 5' -57.5 NC_003324.1 + 30749 0.66 0.596932
Target:  5'- uCGGGAGUgacggaagcacGGGCGCgGucCUGCGCCGu -3'
miRNA:   3'- cGUCCUCAa----------CUUGCGgCu-GGCGCGGC- -5'
12366 5' -57.5 NC_003324.1 + 54005 0.67 0.58627
Target:  5'- uGCAGGcGgcGaAGCGCacuuGCCGCGCUGa -3'
miRNA:   3'- -CGUCCuCaaC-UUGCGgc--UGGCGCGGC- -5'
12366 5' -57.5 NC_003324.1 + 48703 0.67 0.575644
Target:  5'- aGCAGGuccaGAaauacgaaaaggGCGCCaACCGCGUCGg -3'
miRNA:   3'- -CGUCCucaaCU------------UGCGGcUGGCGCGGC- -5'
12366 5' -57.5 NC_003324.1 + 16112 0.67 0.575644
Target:  5'- uGCAGcGAGgUGGuccugcgcaggGCGCUucgguagcgggGGCCGCGCCa -3'
miRNA:   3'- -CGUC-CUCaACU-----------UGCGG-----------CUGGCGCGGc -5'
12366 5' -57.5 NC_003324.1 + 7008 0.67 0.544059
Target:  5'- cGCAGGuccUGcucuacGCGCCGaACUGCGCUGa -3'
miRNA:   3'- -CGUCCucaACu-----UGCGGC-UGGCGCGGC- -5'
12366 5' -57.5 NC_003324.1 + 48665 0.67 0.544059
Target:  5'- cCAGGAG----ACGCUGGCUGCGCa- -3'
miRNA:   3'- cGUCCUCaacuUGCGGCUGGCGCGgc -5'
12366 5' -57.5 NC_003324.1 + 8036 0.68 0.533653
Target:  5'- gGCAuGGAGUUGAACGCac-UgGCGCUc -3'
miRNA:   3'- -CGU-CCUCAACUUGCGgcuGgCGCGGc -5'
12366 5' -57.5 NC_003324.1 + 18899 0.68 0.533653
Target:  5'- --uGGAGacuGGCGCCGaccuucGCCGCGCCa -3'
miRNA:   3'- cguCCUCaacUUGCGGC------UGGCGCGGc -5'
12366 5' -57.5 NC_003324.1 + 14890 0.68 0.523318
Target:  5'- cCAGGaAGcUGccGAUGCCGGCCGCGUUc -3'
miRNA:   3'- cGUCC-UCaAC--UUGCGGCUGGCGCGGc -5'
12366 5' -57.5 NC_003324.1 + 20494 0.68 0.51
Target:  5'- aGCGGGAuGUugcgauUGAGCgagggcgugcccGCCGACCGCaagcgcccaucagcGCCGg -3'
miRNA:   3'- -CGUCCU-CA------ACUUG------------CGGCUGGCG--------------CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.