Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12366 | 5' | -57.5 | NC_003324.1 | + | 13072 | 0.66 | 0.6505 |
Target: 5'- uGCAGccGGUaccgccgcCGCCGACCGCcGCCGa -3' miRNA: 3'- -CGUCc-UCAacuu----GCGGCUGGCG-CGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 13095 | 0.66 | 0.6505 |
Target: 5'- gGCGGGcGUUGAugcCGCCcugcaGAUCGCcaGCCGc -3' miRNA: 3'- -CGUCCuCAACUu--GCGG-----CUGGCG--CGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 14990 | 0.66 | 0.6505 |
Target: 5'- gGCAuGuuGUUGAccGCGUCGAgCGCGUCGc -3' miRNA: 3'- -CGU-CcuCAACU--UGCGGCUgGCGCGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 27203 | 0.66 | 0.6505 |
Target: 5'- aCGGGcucaaGAGCGagagCGACCGCGCUGg -3' miRNA: 3'- cGUCCucaa-CUUGCg---GCUGGCGCGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 48696 | 0.66 | 0.629057 |
Target: 5'- aGCcGGAugcGGGCGCCGACCugcGUGUCGa -3' miRNA: 3'- -CGuCCUcaaCUUGCGGCUGG---CGCGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 52796 | 0.66 | 0.627984 |
Target: 5'- uCAGGcaccgauAGUgcugaUGGACGCgagGAUCGCGCCGg -3' miRNA: 3'- cGUCC-------UCA-----ACUUGCGg--CUGGCGCGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 18174 | 0.66 | 0.627984 |
Target: 5'- -uGGGGGUcaucucgUGGAUGuUCcACCGCGCCGa -3' miRNA: 3'- cgUCCUCA-------ACUUGC-GGcUGGCGCGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 8315 | 0.66 | 0.607623 |
Target: 5'- cGCAGG-GU--AACGCCGuCgGCGCuCGu -3' miRNA: 3'- -CGUCCuCAacUUGCGGCuGgCGCG-GC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 30662 | 0.66 | 0.607623 |
Target: 5'- --cGGAGauagcuGCGCgGAUCGCGCCa -3' miRNA: 3'- cguCCUCaacu--UGCGgCUGGCGCGGc -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 30576 | 0.66 | 0.607623 |
Target: 5'- cGCAGGcgcAGUUuccGAGgGCCugcucGGCgGCGCCGa -3' miRNA: 3'- -CGUCC---UCAA---CUUgCGG-----CUGgCGCGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 30749 | 0.66 | 0.596932 |
Target: 5'- uCGGGAGUgacggaagcacGGGCGCgGucCUGCGCCGu -3' miRNA: 3'- cGUCCUCAa----------CUUGCGgCu-GGCGCGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 54005 | 0.67 | 0.58627 |
Target: 5'- uGCAGGcGgcGaAGCGCacuuGCCGCGCUGa -3' miRNA: 3'- -CGUCCuCaaC-UUGCGgc--UGGCGCGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 16112 | 0.67 | 0.575644 |
Target: 5'- uGCAGcGAGgUGGuccugcgcaggGCGCUucgguagcgggGGCCGCGCCa -3' miRNA: 3'- -CGUC-CUCaACU-----------UGCGG-----------CUGGCGCGGc -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 48703 | 0.67 | 0.575644 |
Target: 5'- aGCAGGuccaGAaauacgaaaaggGCGCCaACCGCGUCGg -3' miRNA: 3'- -CGUCCucaaCU------------UGCGGcUGGCGCGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 7008 | 0.67 | 0.544059 |
Target: 5'- cGCAGGuccUGcucuacGCGCCGaACUGCGCUGa -3' miRNA: 3'- -CGUCCucaACu-----UGCGGC-UGGCGCGGC- -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 48665 | 0.67 | 0.544059 |
Target: 5'- cCAGGAG----ACGCUGGCUGCGCa- -3' miRNA: 3'- cGUCCUCaacuUGCGGCUGGCGCGgc -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 18899 | 0.68 | 0.533653 |
Target: 5'- --uGGAGacuGGCGCCGaccuucGCCGCGCCa -3' miRNA: 3'- cguCCUCaacUUGCGGC------UGGCGCGGc -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 8036 | 0.68 | 0.533653 |
Target: 5'- gGCAuGGAGUUGAACGCac-UgGCGCUc -3' miRNA: 3'- -CGU-CCUCAACUUGCGgcuGgCGCGGc -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 14890 | 0.68 | 0.523318 |
Target: 5'- cCAGGaAGcUGccGAUGCCGGCCGCGUUc -3' miRNA: 3'- cGUCC-UCaAC--UUGCGGCUGGCGCGGc -5' |
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12366 | 5' | -57.5 | NC_003324.1 | + | 20494 | 0.68 | 0.51 |
Target: 5'- aGCGGGAuGUugcgauUGAGCgagggcgugcccGCCGACCGCaagcgcccaucagcGCCGg -3' miRNA: 3'- -CGUCCU-CA------ACUUG------------CGGCUGGCG--------------CGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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