miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12374 3' -53.6 NC_003324.1 + 11225 0.69 0.656477
Target:  5'- cCGGCCGcCAGaccGGCGAaGCGGAccaaggucgggccauAGCGCa -3'
miRNA:   3'- -GCCGGUuGUU---CUGCUgCGUCU---------------UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 12369 0.7 0.573693
Target:  5'- aGGCCAcGCAugcGGACGGuagggcuCGCAGAaauagaucgAGCGCc -3'
miRNA:   3'- gCCGGU-UGU---UCUGCU-------GCGUCU---------UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 13410 0.66 0.837127
Target:  5'- uCGGCCAGauacAGGCGACu--GAGGUGUc -3'
miRNA:   3'- -GCCGGUUgu--UCUGCUGcguCUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 13727 0.71 0.510258
Target:  5'- gCGGCaGGCAcuGGAUGACGCGGGAauacaucauccGCGUg -3'
miRNA:   3'- -GCCGgUUGU--UCUGCUGCGUCUU-----------CGCG- -5'
12374 3' -53.6 NC_003324.1 + 13860 0.66 0.828124
Target:  5'- uGGCUucguGCGGGAgGGCGUAau-GCGCc -3'
miRNA:   3'- gCCGGu---UGUUCUgCUGCGUcuuCGCG- -5'
12374 3' -53.6 NC_003324.1 + 14319 0.74 0.383798
Target:  5'- aCGGCagugaagcacgucagAGCGAGGCaGCuGCAGAAGCGCg -3'
miRNA:   3'- -GCCGg--------------UUGUUCUGcUG-CGUCUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 14577 0.73 0.401109
Target:  5'- gCGGCCugccggcGCAAGcggccgGCGGCGCAGGcgguAGCGUg -3'
miRNA:   3'- -GCCGGu------UGUUC------UGCUGCGUCU----UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 15016 0.69 0.652056
Target:  5'- aCGGgCA--AAGGCGACGgCAGGucgaucauGGCGCa -3'
miRNA:   3'- -GCCgGUugUUCUGCUGC-GUCU--------UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 15376 0.67 0.770083
Target:  5'- -cGCUgaauACGAGcgcaGCGA-GCAGAAGCGCg -3'
miRNA:   3'- gcCGGu---UGUUC----UGCUgCGUCUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 15582 0.72 0.448952
Target:  5'- gGGCCGACAcggcAGAUGccaAgGCGGGAGCGa -3'
miRNA:   3'- gCCGGUUGU----UCUGC---UgCGUCUUCGCg -5'
12374 3' -53.6 NC_003324.1 + 15614 0.66 0.830847
Target:  5'- aGGCUuuuCAAGAguucgcuguuuaaGGCGCAGAauggcgacggccccGGCGCg -3'
miRNA:   3'- gCCGGuu-GUUCUg------------CUGCGUCU--------------UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 15963 0.66 0.8095
Target:  5'- aGGCgGggGCGuuGGCGACGauaAGAuGCGCg -3'
miRNA:   3'- gCCGgU--UGUu-CUGCUGCg--UCUuCGCG- -5'
12374 3' -53.6 NC_003324.1 + 16232 0.7 0.607795
Target:  5'- aGGCCGu---GcCGACGCGGccAGCGCa -3'
miRNA:   3'- gCCGGUuguuCuGCUGCGUCu-UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 16803 0.7 0.596759
Target:  5'- cCGGCCAGCAGGGUGACgGCA--AGCa- -3'
miRNA:   3'- -GCCGGUUGUUCUGCUG-CGUcuUCGcg -5'
12374 3' -53.6 NC_003324.1 + 17089 0.66 0.824463
Target:  5'- gGGCCAagaacGCAgcgaaacgugaGGAUGGCGUccugauccagaauGAAGCGCu -3'
miRNA:   3'- gCCGGU-----UGU-----------UCUGCUGCGu------------CUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 17162 0.72 0.458894
Target:  5'- uGGcCCAGCGAuuGACGAgGCGcuGGCGCg -3'
miRNA:   3'- gCC-GGUUGUU--CUGCUgCGUcuUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 17643 0.68 0.685091
Target:  5'- gGGCCcgagGAUAucGACGACGUu--GGCGCg -3'
miRNA:   3'- gCCGG----UUGUu-CUGCUGCGucuUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 18008 0.67 0.779178
Target:  5'- gCGGCCGGCAc--UGAUGCAGAacgacuuugcgaaGGuCGCg -3'
miRNA:   3'- -GCCGGUUGUucuGCUGCGUCU-------------UC-GCG- -5'
12374 3' -53.6 NC_003324.1 + 18518 0.66 0.817979
Target:  5'- cCGG-CGGCAAGGuCG-CGCAGAccagaccAGCGUc -3'
miRNA:   3'- -GCCgGUUGUUCU-GCuGCGUCU-------UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 18598 0.72 0.458894
Target:  5'- gGGCCAucuGguGGGCGGCGUGGAAcauGUGCg -3'
miRNA:   3'- gCCGGU---UguUCUGCUGCGUCUU---CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.