miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12377 5' -56.1 NC_003324.1 + 21596 0.66 0.630015
Target:  5'- cGCCGUGGCGGCcguccgaccuugAGCAACgcgacgggCGCGGCAu -3'
miRNA:   3'- uUGGCGUCGUUG------------UCGUUG--------GCGUCGUc -5'
12377 5' -56.1 NC_003324.1 + 28817 0.68 0.508917
Target:  5'- gGAgCGCGGC-GCGGgAACUGCAgaGCAGg -3'
miRNA:   3'- -UUgGCGUCGuUGUCgUUGGCGU--CGUC- -5'
12377 5' -56.1 NC_003324.1 + 5635 0.68 0.498324
Target:  5'- -cCCGCGGCGAaGGUuGCgGCGGCAa -3'
miRNA:   3'- uuGGCGUCGUUgUCGuUGgCGUCGUc -5'
12377 5' -56.1 NC_003324.1 + 35414 1.05 0.001113
Target:  5'- cAACCGCAGCAACAGCAACCGCAGCAGc -3'
miRNA:   3'- -UUGGCGUCGUUGUCGUUGGCGUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 24092 0.66 0.607615
Target:  5'- cAAgCGCAcGCAGCAGCccuACCGCcGCc- -3'
miRNA:   3'- -UUgGCGU-CGUUGUCGu--UGGCGuCGuc -5'
12377 5' -56.1 NC_003324.1 + 30115 0.66 0.607615
Target:  5'- gGGCgGCGGCAugGGUggUguugguggCGCAGCAu -3'
miRNA:   3'- -UUGgCGUCGUugUCGuuG--------GCGUCGUc -5'
12377 5' -56.1 NC_003324.1 + 14462 0.66 0.596443
Target:  5'- cGGuuGCGGCGcguugauugGCAGCAGCCGUGGa-- -3'
miRNA:   3'- -UUggCGUCGU---------UGUCGUUGGCGUCguc -5'
12377 5' -56.1 NC_003324.1 + 56673 0.66 0.596443
Target:  5'- uGCCGCcgucaauucgucAGCGAUAGCGGCguuauggGCGGCGGc -3'
miRNA:   3'- uUGGCG------------UCGUUGUCGUUGg------CGUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 36525 0.67 0.574202
Target:  5'- cGCCGCGggcGCGACGGCAugCccuaCGGCAu -3'
miRNA:   3'- uUGGCGU---CGUUGUCGUugGc---GUCGUc -5'
12377 5' -56.1 NC_003324.1 + 7865 0.68 0.508917
Target:  5'- cGCCGCGGCGGCAaagcccguuGCGAUCGC-GCc- -3'
miRNA:   3'- uUGGCGUCGUUGU---------CGUUGGCGuCGuc -5'
12377 5' -56.1 NC_003324.1 + 18134 0.67 0.530377
Target:  5'- gAACCGCgaAGUGACGGCAcucGCCGCcuaucGCAu -3'
miRNA:   3'- -UUGGCG--UCGUUGUCGU---UGGCGu----CGUc -5'
12377 5' -56.1 NC_003324.1 + 13468 0.66 0.581968
Target:  5'- gAGCUGCAGCAAUuccuGCAgauccucgauccguACgGCAGCGc -3'
miRNA:   3'- -UUGGCGUCGUUGu---CGU--------------UGgCGUCGUc -5'
12377 5' -56.1 NC_003324.1 + 44099 0.66 0.630015
Target:  5'- -cUCGCAGCGcuCGGCAugaucCCGgCGGCAGc -3'
miRNA:   3'- uuGGCGUCGUu-GUCGUu----GGC-GUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 41702 0.67 0.519603
Target:  5'- gAGCCGUGGCAAUGGUGGgCGUGGCu- -3'
miRNA:   3'- -UUGGCGUCGUUGUCGUUgGCGUCGuc -5'
12377 5' -56.1 NC_003324.1 + 2359 0.66 0.618809
Target:  5'- -cCCGCAGgGGCGggucGCggUCGCuGCGGg -3'
miRNA:   3'- uuGGCGUCgUUGU----CGuuGGCGuCGUC- -5'
12377 5' -56.1 NC_003324.1 + 44926 0.66 0.589754
Target:  5'- aGGCUGCccacGGCAGCAGCGggcacgccaaugacGCCGCccccuucuccccgcAGCAGc -3'
miRNA:   3'- -UUGGCG----UCGUUGUCGU--------------UGGCG--------------UCGUC- -5'
12377 5' -56.1 NC_003324.1 + 47608 0.67 0.519603
Target:  5'- uGCCGCAGCuugAGCAGCAGuCCGgauagaAGguGa -3'
miRNA:   3'- uUGGCGUCG---UUGUCGUU-GGCg-----UCguC- -5'
12377 5' -56.1 NC_003324.1 + 50111 0.68 0.508917
Target:  5'- aAACCGgAGCcgauCAGCGGCCcCAGCGc -3'
miRNA:   3'- -UUGGCgUCGuu--GUCGUUGGcGUCGUc -5'
12377 5' -56.1 NC_003324.1 + 48473 0.66 0.615449
Target:  5'- aGGCCGCAGCcgAGCagguaggcgccaagGGCAACUGCgAGCc- -3'
miRNA:   3'- -UUGGCGUCG--UUG--------------UCGUUGGCG-UCGuc -5'
12377 5' -56.1 NC_003324.1 + 36269 0.66 0.607615
Target:  5'- -gUCGC-GCAACAuCAguauGCUGCAGCAGg -3'
miRNA:   3'- uuGGCGuCGUUGUcGU----UGGCGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.