Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
12377 | 5' | -56.1 | NC_003324.1 | + | 35414 | 1.05 | 0.001113 |
Target: 5'- cAACCGCAGCAACAGCAACCGCAGCAGc -3' miRNA: 3'- -UUGGCGUCGUUGUCGUUGGCGUCGUC- -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 35016 | 0.95 | 0.006904 |
Target: 5'- uGCCGCAGCAGCAGCAGCgGCGGCGGc -3' miRNA: 3'- uUGGCGUCGUUGUCGUUGgCGUCGUC- -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 55394 | 0.8 | 0.080583 |
Target: 5'- gAGCCGCuguGGCAGCuuguuccAGCAGCCGCGGCAa -3' miRNA: 3'- -UUGGCG---UCGUUG-------UCGUUGGCGUCGUc -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 30152 | 0.76 | 0.151885 |
Target: 5'- aAGCCGCAGCGGCcggugucGCGACCGgCGGCGu -3' miRNA: 3'- -UUGGCGUCGUUGu------CGUUGGC-GUCGUc -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 30617 | 0.75 | 0.179453 |
Target: 5'- cAGCgCGUcGCAGCGGCAGCgGCAGCGa -3' miRNA: 3'- -UUG-GCGuCGUUGUCGUUGgCGUCGUc -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 8179 | 0.75 | 0.189587 |
Target: 5'- cACagGC-GCAACGGCGACCGUGGCAGc -3' miRNA: 3'- uUGg-CGuCGUUGUCGUUGGCGUCGUC- -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 2273 | 0.74 | 0.211369 |
Target: 5'- -cCCGCAGCGACcGCGACCcGCcccuGCGGg -3' miRNA: 3'- uuGGCGUCGUUGuCGUUGG-CGu---CGUC- -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 43406 | 0.74 | 0.213662 |
Target: 5'- uGACCGCAGuCGuggguggucucggcgACGGCGAaauuguagcuCCGCAGCAGg -3' miRNA: 3'- -UUGGCGUC-GU---------------UGUCGUU----------GGCGUCGUC- -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 35082 | 0.73 | 0.261402 |
Target: 5'- uGCUGCGGCAGCAaacGCAAaCGCuGCAGg -3' miRNA: 3'- uUGGCGUCGUUGU---CGUUgGCGuCGUC- -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 21165 | 0.73 | 0.241592 |
Target: 5'- --aCGCAGCAcgcgccGCGGCGGCCGacaaGGCAGc -3' miRNA: 3'- uugGCGUCGU------UGUCGUUGGCg---UCGUC- -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 6224 | 0.73 | 0.229091 |
Target: 5'- aGGCCGaggcGCAGCAGCAG-CGCAGCAa -3' miRNA: 3'- -UUGGCgu--CGUUGUCGUUgGCGUCGUc -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 41215 | 0.72 | 0.268294 |
Target: 5'- uGCCGCAugacGCAACAGCuACCGCuccCAGg -3' miRNA: 3'- uUGGCGU----CGUUGUCGuUGGCGuc-GUC- -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 31555 | 0.72 | 0.289847 |
Target: 5'- cGCCGUccCAACAGCGACgGCAGCu- -3' miRNA: 3'- uUGGCGucGUUGUCGUUGgCGUCGuc -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 13170 | 0.72 | 0.297328 |
Target: 5'- aGGCUGCgucGGCGGCGGuCGGCgGCGGCGGu -3' miRNA: 3'- -UUGGCG---UCGUUGUC-GUUGgCGUCGUC- -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 8325 | 0.72 | 0.297328 |
Target: 5'- cGCCGuCGGCGcucguuACGGUGACCGuCGGCGGg -3' miRNA: 3'- uUGGC-GUCGU------UGUCGUUGGC-GUCGUC- -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 3269 | 0.72 | 0.297328 |
Target: 5'- aAGCgGagGGCGGCGGCAACCGuCGGCAu -3' miRNA: 3'- -UUGgCg-UCGUUGUCGUUGGC-GUCGUc -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 8854 | 0.72 | 0.275331 |
Target: 5'- cGGCCGUcgggAGCAuuuCGGUAGCCGCGGgAGa -3' miRNA: 3'- -UUGGCG----UCGUu--GUCGUUGGCGUCgUC- -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 35468 | 0.71 | 0.345345 |
Target: 5'- cAugCGCgGGCGGCcgAGCAgGCUGCAGCAGc -3' miRNA: 3'- -UugGCG-UCGUUG--UCGU-UGGCGUCGUC- -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 33684 | 0.71 | 0.336969 |
Target: 5'- cGCCGuCGGCAACGcGCugcGCaaaGCAGCAGg -3' miRNA: 3'- uUGGC-GUCGUUGU-CGu--UGg--CGUCGUC- -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 35721 | 0.71 | 0.336139 |
Target: 5'- aGGCCGaGGCcaAACAGCAGCagaugaugcugcgCGCAGCAGa -3' miRNA: 3'- -UUGGCgUCG--UUGUCGUUG-------------GCGUCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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