Results 1 - 20 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12380 | 5' | -60.1 | NC_003324.1 | + | 43018 | 0.66 | 0.50793 |
Target: 5'- gGCAUGGgacgagacCGCCGGCGCaGUgacCGCCAa- -3' miRNA: 3'- -CGUGCC--------GCGGCUGCG-CGaa-GCGGUcu -5' |
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12380 | 5' | -60.1 | NC_003324.1 | + | 8282 | 0.67 | 0.403532 |
Target: 5'- uGguCGaaGUGCCaGGCGCGCgcCGCCGGGc -3' miRNA: 3'- -CguGC--CGCGG-CUGCGCGaaGCGGUCU- -5' |
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12380 | 5' | -60.1 | NC_003324.1 | + | 21153 | 0.68 | 0.386044 |
Target: 5'- cCGCGGCgGCCGACaagGCaGCgUUUGCCGGu -3' miRNA: 3'- cGUGCCG-CGGCUG---CG-CG-AAGCGGUCu -5' |
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12380 | 5' | -60.1 | NC_003324.1 | + | 38169 | 1.1 | 0.000308 |
Target: 5'- aGCACGGCGCCGACGCGCUUCGCCAGAa -3' miRNA: 3'- -CGUGCCGCGGCUGCGCGAAGCGGUCU- -5' |
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12380 | 5' | -60.1 | NC_003324.1 | + | 41815 | 0.66 | 0.478208 |
Target: 5'- -gGgGGUGCCGugGCGUgaUCGCaUGGAg -3' miRNA: 3'- cgUgCCGCGGCugCGCGa-AGCG-GUCU- -5' |
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12380 | 5' | -60.1 | NC_003324.1 | + | 54203 | 0.66 | 0.472366 |
Target: 5'- uGCGCaGGCGCCaacuuuucgagguugGugAUGCGCUUCGUCAc- -3' miRNA: 3'- -CGUG-CCGCGG---------------C--UGCGCGAAGCGGUcu -5' |
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12380 | 5' | -60.1 | NC_003324.1 | + | 30114 | 0.66 | 0.467525 |
Target: 5'- -gGCGGCGgCaugggugguguugGugGCGCagcaucgcgUCGCCAGAg -3' miRNA: 3'- cgUGCCGCgG-------------CugCGCGa--------AGCGGUCU- -5' |
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12380 | 5' | -60.1 | NC_003324.1 | + | 29561 | 0.66 | 0.458877 |
Target: 5'- -aGauGCGcCCGACGCGCccgcaGCCAGGc -3' miRNA: 3'- cgUgcCGC-GGCUGCGCGaag--CGGUCU- -5' |
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12380 | 5' | -60.1 | NC_003324.1 | + | 26147 | 0.66 | 0.458877 |
Target: 5'- gGCAauUGGCGCgaaGcCGCGCUUgaGCUAGAg -3' miRNA: 3'- -CGU--GCCGCGg--CuGCGCGAAg-CGGUCU- -5' |
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12380 | 5' | -60.1 | NC_003324.1 | + | 54320 | 0.67 | 0.403532 |
Target: 5'- gGCAacCGGUGCCG-CGC-CUUCGCUuuGAg -3' miRNA: 3'- -CGU--GCCGCGGCuGCGcGAAGCGGu-CU- -5' |
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12380 | 5' | -60.1 | NC_003324.1 | + | 51769 | 0.67 | 0.421513 |
Target: 5'- uGCA-GGCGCuCGACGCGaa-CGUCGGu -3' miRNA: 3'- -CGUgCCGCG-GCUGCGCgaaGCGGUCu -5' |
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12380 | 5' | -60.1 | NC_003324.1 | + | 7727 | 0.66 | 0.458877 |
Target: 5'- aGC-CGGCacuGCCGGCGCGaCUcCGCgaAGAu -3' miRNA: 3'- -CGuGCCG---CGGCUGCGC-GAaGCGg-UCU- -5' |
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12380 | 5' | -60.1 | NC_003324.1 | + | 50347 | 0.66 | 0.504922 |
Target: 5'- -gGCGGCGCaucauucucuuucuCGACGCGggcUUUCGCCucGAu -3' miRNA: 3'- cgUGCCGCG--------------GCUGCGC---GAAGCGGu-CU- -5' |
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12380 | 5' | -60.1 | NC_003324.1 | + | 54052 | 0.67 | 0.411564 |
Target: 5'- cGCGuCGGCGCCGAccgugaaCGUGCUcgaaaUUGUCGGc -3' miRNA: 3'- -CGU-GCCGCGGCU-------GCGCGA-----AGCGGUCu -5' |
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12380 | 5' | -60.1 | NC_003324.1 | + | 53482 | 0.66 | 0.497932 |
Target: 5'- aGUA-GGCGCCGugacCGCGa--UGCCAGAu -3' miRNA: 3'- -CGUgCCGCGGCu---GCGCgaaGCGGUCU- -5' |
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12380 | 5' | -60.1 | NC_003324.1 | + | 5495 | 0.66 | 0.458877 |
Target: 5'- --uCGGCGCCGcAgGUGCgggCGCCAu- -3' miRNA: 3'- cguGCCGCGGC-UgCGCGaa-GCGGUcu -5' |
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12380 | 5' | -60.1 | NC_003324.1 | + | 20671 | 0.67 | 0.403532 |
Target: 5'- gGCgACGGCGCCacagcaccgGAUccCGC-UCGCCAGAa -3' miRNA: 3'- -CG-UGCCGCGG---------CUGc-GCGaAGCGGUCU- -5' |
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12380 | 5' | -60.1 | NC_003324.1 | + | 14664 | 0.67 | 0.403532 |
Target: 5'- -uGCGcCGCCGGC-CGCUUgCGCCGGc -3' miRNA: 3'- cgUGCcGCGGCUGcGCGAA-GCGGUCu -5' |
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12380 | 5' | -60.1 | NC_003324.1 | + | 39852 | 0.66 | 0.488023 |
Target: 5'- uGCACcGUGCCGAgaucaucgagcaCGUGC--CGCCGGAc -3' miRNA: 3'- -CGUGcCGCGGCU------------GCGCGaaGCGGUCU- -5' |
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12380 | 5' | -60.1 | NC_003324.1 | + | 18893 | 0.66 | 0.468491 |
Target: 5'- --cUGGCGCCGACcuuCGCcgCGCCAu- -3' miRNA: 3'- cguGCCGCGGCUGc--GCGaaGCGGUcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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