miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12412 5' -54.4 NC_003324.1 + 51381 0.65 0.800397
Target:  5'- cCGuauGAUCGuGAcgccuGCCGGCGGCugauccuugcaaaACCGUCg -3'
miRNA:   3'- aGC---UUAGC-CUu----CGGCCGCUG-------------UGGUAG- -5'
12412 5' -54.4 NC_003324.1 + 54151 0.66 0.791658
Target:  5'- cUCGA--CGGGAGCUGGCcGCGUCAUg -3'
miRNA:   3'- -AGCUuaGCCUUCGGCCGcUGUGGUAg -5'
12412 5' -54.4 NC_003324.1 + 27234 0.66 0.78179
Target:  5'- aUGAAaaGGAAGUgGGCGGCcaaCGUCg -3'
miRNA:   3'- aGCUUagCCUUCGgCCGCUGug-GUAG- -5'
12412 5' -54.4 NC_003324.1 + 26636 0.66 0.78179
Target:  5'- cUCGAuaUGGuAGCCGGCGAgggugaCACCu-- -3'
miRNA:   3'- -AGCUuaGCCuUCGGCCGCU------GUGGuag -5'
12412 5' -54.4 NC_003324.1 + 41040 0.66 0.78179
Target:  5'- uUCGAGU-GuGAGCCGGCGAUAgCCuugCa -3'
miRNA:   3'- -AGCUUAgCcUUCGGCCGCUGU-GGua-G- -5'
12412 5' -54.4 NC_003324.1 + 21180 0.66 0.778799
Target:  5'- cCGAcgUGGAAGCCGacgcagcacgcgccGCGGCgGCCGa- -3'
miRNA:   3'- aGCUuaGCCUUCGGC--------------CGCUG-UGGUag -5'
12412 5' -54.4 NC_003324.1 + 45992 0.66 0.771766
Target:  5'- uUCGcuUCcGAAG-CGGCGGCGCCGaaUCg -3'
miRNA:   3'- -AGCuuAGcCUUCgGCCGCUGUGGU--AG- -5'
12412 5' -54.4 NC_003324.1 + 37849 0.66 0.771766
Target:  5'- gUGGAUUuggucagaGGAAGUCGGCGAUcCCGcUCa -3'
miRNA:   3'- aGCUUAG--------CCUUCGGCCGCUGuGGU-AG- -5'
12412 5' -54.4 NC_003324.1 + 16670 0.66 0.771766
Target:  5'- cUCGAGUCGGAGGCauGCaucCGCCu-- -3'
miRNA:   3'- -AGCUUAGCCUUCGgcCGcu-GUGGuag -5'
12412 5' -54.4 NC_003324.1 + 50203 0.66 0.761598
Target:  5'- gCGAcaaGUCGGcGAGCCuugaaGGCGugACCuugAUCg -3'
miRNA:   3'- aGCU---UAGCC-UUCGG-----CCGCugUGG---UAG- -5'
12412 5' -54.4 NC_003324.1 + 33461 0.66 0.761598
Target:  5'- cCGAAUUuuauGGAGCCGuCGACGCCGa- -3'
miRNA:   3'- aGCUUAGc---CUUCGGCcGCUGUGGUag -5'
12412 5' -54.4 NC_003324.1 + 14019 0.66 0.761598
Target:  5'- aUCGAGaUGGGAGCCaaCGGCACUcgCu -3'
miRNA:   3'- -AGCUUaGCCUUCGGccGCUGUGGuaG- -5'
12412 5' -54.4 NC_003324.1 + 44746 0.66 0.751297
Target:  5'- aCG-AUCGacGAAGUgcGCGACACCAUCu -3'
miRNA:   3'- aGCuUAGC--CUUCGgcCGCUGUGGUAG- -5'
12412 5' -54.4 NC_003324.1 + 5401 0.66 0.751297
Target:  5'- uUCGGcUCGGAAGauGGCGcccGCACCu-- -3'
miRNA:   3'- -AGCUuAGCCUUCggCCGC---UGUGGuag -5'
12412 5' -54.4 NC_003324.1 + 19380 0.67 0.740875
Target:  5'- aUGGAUCGac-GCCGGCGcgcgucGCGCCGUg -3'
miRNA:   3'- aGCUUAGCcuuCGGCCGC------UGUGGUAg -5'
12412 5' -54.4 NC_003324.1 + 36754 0.67 0.739827
Target:  5'- cCGGAUacCGGAcaAGacaucucgcaucuCCGGCGGCACCuUCg -3'
miRNA:   3'- aGCUUA--GCCU--UC-------------GGCCGCUGUGGuAG- -5'
12412 5' -54.4 NC_003324.1 + 14570 0.67 0.734568
Target:  5'- aUGggUCGcGGccugccggcgcaagcGGCCGGCGGCGCaggCg -3'
miRNA:   3'- aGCuuAGC-CU---------------UCGGCCGCUGUGguaG- -5'
12412 5' -54.4 NC_003324.1 + 28671 0.67 0.730343
Target:  5'- gCGGG-CGGAAGCCG-CGAacCGCCAa- -3'
miRNA:   3'- aGCUUaGCCUUCGGCcGCU--GUGGUag -5'
12412 5' -54.4 NC_003324.1 + 49214 0.67 0.730343
Target:  5'- cCGAcgAUCcGAAcGCCuGCGACGCCAUg -3'
miRNA:   3'- aGCU--UAGcCUU-CGGcCGCUGUGGUAg -5'
12412 5' -54.4 NC_003324.1 + 49866 0.67 0.719712
Target:  5'- -gGAGUaCGGcaaguGAGCCGGCGggcaaagaucGCugCGUCg -3'
miRNA:   3'- agCUUA-GCC-----UUCGGCCGC----------UGugGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.