miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12414 5' -52.3 NC_003324.1 + 27754 0.66 0.899543
Target:  5'- aGAagcUCGGCGCCACgcAUGAGGUGGucGCg -3'
miRNA:   3'- gCU---AGCUGCGGUGgcUGUUCUACU--CG- -5'
12414 5' -52.3 NC_003324.1 + 30140 0.68 0.788491
Target:  5'- cCGGU-GuCGCgACCGGCGgcguGAUGGGCg -3'
miRNA:   3'- -GCUAgCuGCGgUGGCUGUu---CUACUCG- -5'
12414 5' -52.3 NC_003324.1 + 29453 0.68 0.778515
Target:  5'- -cGUUGuCGUCACCGACGAGGgcaAGCc -3'
miRNA:   3'- gcUAGCuGCGGUGGCUGUUCUac-UCG- -5'
12414 5' -52.3 NC_003324.1 + 22032 0.82 0.154009
Target:  5'- -cAUCG-CGCCGCCGACGAGAUG-GCc -3'
miRNA:   3'- gcUAGCuGCGGUGGCUGUUCUACuCG- -5'
12414 5' -52.3 NC_003324.1 + 32121 0.66 0.890275
Target:  5'- uCGGcCGugagcCGCCGCCGGC-AGAcagcucauuccuguUGAGCa -3'
miRNA:   3'- -GCUaGCu----GCGGUGGCUGuUCU--------------ACUCG- -5'
12414 5' -52.3 NC_003324.1 + 21668 0.66 0.885099
Target:  5'- uCGGcUCGACGCCG-----AAGAUGGGCg -3'
miRNA:   3'- -GCU-AGCUGCGGUggcugUUCUACUCG- -5'
12414 5' -52.3 NC_003324.1 + 45985 0.67 0.861481
Target:  5'- cCGAagCGGCGgCGCCGAaucGAgGAGCg -3'
miRNA:   3'- -GCUa-GCUGCgGUGGCUguuCUaCUCG- -5'
12414 5' -52.3 NC_003324.1 + 1106 0.67 0.861481
Target:  5'- aGAUUGAgccCGCCGCCGuCAGc--GAGCu -3'
miRNA:   3'- gCUAGCU---GCGGUGGCuGUUcuaCUCG- -5'
12414 5' -52.3 NC_003324.1 + 6820 0.67 0.825724
Target:  5'- gGAUCGGCGCCguuggccaccuuuACCGAuguCGGGAgaaagGAGa -3'
miRNA:   3'- gCUAGCUGCGG-------------UGGCU---GUUCUa----CUCg -5'
12414 5' -52.3 NC_003324.1 + 49125 0.68 0.798303
Target:  5'- gGAUUGcccCGCCGCCGcgggaGAGGUGAGa -3'
miRNA:   3'- gCUAGCu--GCGGUGGCug---UUCUACUCg -5'
12414 5' -52.3 NC_003324.1 + 4575 0.68 0.798303
Target:  5'- -aGUCGcguCGCCGCCGuAgAGGAugUGAGCc -3'
miRNA:   3'- gcUAGCu--GCGGUGGC-UgUUCU--ACUCG- -5'
12414 5' -52.3 NC_003324.1 + 593 0.67 0.826641
Target:  5'- uGGUCGA-GCUGCCGACcuuGGUGAucGCc -3'
miRNA:   3'- gCUAGCUgCGGUGGCUGuu-CUACU--CG- -5'
12414 5' -52.3 NC_003324.1 + 39876 0.66 0.899543
Target:  5'- aGAUCGuCGUCAUCGaggGCGAGGUGcaccguGCc -3'
miRNA:   3'- gCUAGCuGCGGUGGC---UGUUCUACu-----CG- -5'
12414 5' -52.3 NC_003324.1 + 49184 0.68 0.798303
Target:  5'- gCGAUCG-CGUCACCGGCAGcGAaauaGAcGCc -3'
miRNA:   3'- -GCUAGCuGCGGUGGCUGUU-CUa---CU-CG- -5'
12414 5' -52.3 NC_003324.1 + 26537 0.66 0.897444
Target:  5'- -aAUUGAUGUCGCCGACAuugccgucgaugaaGGAagcgcGAGCg -3'
miRNA:   3'- gcUAGCUGCGGUGGCUGU--------------UCUa----CUCG- -5'
12414 5' -52.3 NC_003324.1 + 17862 0.67 0.844513
Target:  5'- aGAUCGcCGgcaUCACCGGCAuGAUG-GCc -3'
miRNA:   3'- gCUAGCuGC---GGUGGCUGUuCUACuCG- -5'
12414 5' -52.3 NC_003324.1 + 35166 0.68 0.798303
Target:  5'- aGAU-GAUGCCACCGG--AGAUacGGGCg -3'
miRNA:   3'- gCUAgCUGCGGUGGCUguUCUA--CUCG- -5'
12414 5' -52.3 NC_003324.1 + 17396 0.68 0.785515
Target:  5'- uCGAUCGGuggugaccagguccUGCCAuCCGAUGcaGUGAGCg -3'
miRNA:   3'- -GCUAGCU--------------GCGGU-GGCUGUucUACUCG- -5'
12414 5' -52.3 NC_003324.1 + 40038 0.66 0.892454
Target:  5'- aGAUUG-CGCagGCUuuCGAGGUGAGCa -3'
miRNA:   3'- gCUAGCuGCGg-UGGcuGUUCUACUCG- -5'
12414 5' -52.3 NC_003324.1 + 34151 0.66 0.869606
Target:  5'- aGggCGGaGCCGCUGGCAu--UGGGCg -3'
miRNA:   3'- gCuaGCUgCGGUGGCUGUucuACUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.