miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12416 3' -54.6 NC_003324.1 + 57378 0.66 0.799528
Target:  5'- cGGCGGaGGCGaggGCGGCaCGaccggcGUUGAGCa -3'
miRNA:   3'- -CCGUUgUUGCaa-CGCCG-GC------CAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 40126 0.67 0.696985
Target:  5'- cGCAACuACGgugGaCGGCCGa-CGAGCu -3'
miRNA:   3'- cCGUUGuUGCaa-C-GCCGGCcaGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 20563 0.68 0.675375
Target:  5'- cGCAACAucccgcuccGCGaUGCGGC-GaUCGAGCg -3'
miRNA:   3'- cCGUUGU---------UGCaACGCCGgCcAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 20609 0.76 0.255808
Target:  5'- cGGCgcugAugGGCGcUUGCGGUCGG-CGGGCa -3'
miRNA:   3'- -CCG----UugUUGC-AACGCCGGCCaGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 15224 0.66 0.78987
Target:  5'- cGGCGGCGagccuuuucACGUgGC-GCCGuGUCGAcGCc -3'
miRNA:   3'- -CCGUUGU---------UGCAaCGcCGGC-CAGCU-CG- -5'
12416 3' -54.6 NC_003324.1 + 54345 0.66 0.77008
Target:  5'- cGGCu-CGGCGcUGauGCCGGUCcauGGCa -3'
miRNA:   3'- -CCGuuGUUGCaACgcCGGCCAGc--UCG- -5'
12416 3' -54.6 NC_003324.1 + 35480 0.66 0.759969
Target:  5'- gGGCGAgGAaaccaugcGCGGgCGGcCGAGCa -3'
miRNA:   3'- -CCGUUgUUgcaa----CGCCgGCCaGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 30614 0.66 0.75691
Target:  5'- cGCGucGCAGCGgcaGCGGCagcgaaggucgccaCGGUCGcaGGCg -3'
miRNA:   3'- cCGU--UGUUGCaa-CGCCG--------------GCCAGC--UCG- -5'
12416 3' -54.6 NC_003324.1 + 39953 0.67 0.728906
Target:  5'- cGGCAAgGAa---GCGGCCgacaagaaGGUCGAGg -3'
miRNA:   3'- -CCGUUgUUgcaaCGCCGG--------CCAGCUCg -5'
12416 3' -54.6 NC_003324.1 + 47728 0.67 0.707702
Target:  5'- cGGCGugccacagcuCGACGaugGCGGCCcGGUCGccgucaugcgcGGCg -3'
miRNA:   3'- -CCGUu---------GUUGCaa-CGCCGG-CCAGC-----------UCG- -5'
12416 3' -54.6 NC_003324.1 + 53291 0.67 0.728906
Target:  5'- cGCAGCuuuCGUUGUGaaGCCGGcCGccAGCu -3'
miRNA:   3'- cCGUUGuu-GCAACGC--CGGCCaGC--UCG- -5'
12416 3' -54.6 NC_003324.1 + 1276 0.67 0.749729
Target:  5'- --uGACGACGUUcggaucGCGGCCGGauuUC-AGCg -3'
miRNA:   3'- ccgUUGUUGCAA------CGCCGGCC---AGcUCG- -5'
12416 3' -54.6 NC_003324.1 + 3159 0.66 0.799528
Target:  5'- uGGCAAgAGCGggagcgccgUGCGGCCa-UUGAGa -3'
miRNA:   3'- -CCGUUgUUGCa--------ACGCCGGccAGCUCg -5'
12416 3' -54.6 NC_003324.1 + 40496 0.67 0.725748
Target:  5'- aGGCGACGACGaagcGCcagacgaaggcgaaGGCCGGU-GAGg -3'
miRNA:   3'- -CCGUUGUUGCaa--CG--------------CCGGCCAgCUCg -5'
12416 3' -54.6 NC_003324.1 + 45217 0.66 0.799528
Target:  5'- aGGCA-CAuCGUUGUugauacgccGGCagCGGUCGAGa -3'
miRNA:   3'- -CCGUuGUuGCAACG---------CCG--GCCAGCUCg -5'
12416 3' -54.6 NC_003324.1 + 13170 0.67 0.749729
Target:  5'- aGGCu---GCGUcgGCGG-CGGUCG-GCg -3'
miRNA:   3'- -CCGuuguUGCAa-CGCCgGCCAGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 53695 0.67 0.718346
Target:  5'- cGGCGACGuuCGUcGCGcaGCUcGUCGAGUg -3'
miRNA:   3'- -CCGUUGUu-GCAaCGC--CGGcCAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 30088 0.68 0.686206
Target:  5'- cGCAGCAucGCGUcgccagagUGCaccGGCCGGgaUCGAuGCg -3'
miRNA:   3'- cCGUUGU--UGCA--------ACG---CCGGCC--AGCU-CG- -5'
12416 3' -54.6 NC_003324.1 + 29549 0.66 0.798569
Target:  5'- cGCGcccGCAGCcagGCGGCCGugucaucGUCGAGg -3'
miRNA:   3'- cCGU---UGUUGcaaCGCCGGC-------CAGCUCg -5'
12416 3' -54.6 NC_003324.1 + 22611 0.66 0.769075
Target:  5'- cGGCAAUAACGUcGUGuuccucaCCGGUaccccguUGAGCa -3'
miRNA:   3'- -CCGUUGUUGCAaCGCc------GGCCA-------GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.