miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12418 5' -55.7 NC_003324.1 + 51001 0.66 0.766773
Target:  5'- uCGACGAggCUCGGacgaagGCCGACGaaaugGCCCa -3'
miRNA:   3'- -GCUGCUa-GAGCUg-----UGGUUGCcg---CGGG- -5'
12418 5' -55.7 NC_003324.1 + 53977 0.66 0.766773
Target:  5'- uGAUGAUCUUG-CGgCGG-GGCGCaCCa -3'
miRNA:   3'- gCUGCUAGAGCuGUgGUUgCCGCG-GG- -5'
12418 5' -55.7 NC_003324.1 + 55928 0.66 0.766773
Target:  5'- gGAUGAUgC-CGACACCGACGacGUGUUCc -3'
miRNA:   3'- gCUGCUA-GaGCUGUGGUUGC--CGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 18786 0.66 0.766773
Target:  5'- --uCGAUCUCGGCAacgaugcgcggguCCAuggcgcggcgaagguCGGCGCCa -3'
miRNA:   3'- gcuGCUAGAGCUGU-------------GGUu--------------GCCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 35464 0.66 0.766773
Target:  5'- uCGGCGAUgUCGGCGagcgugggGACGGCGaucgCCg -3'
miRNA:   3'- -GCUGCUAgAGCUGUgg------UUGCCGCg---GG- -5'
12418 5' -55.7 NC_003324.1 + 3375 0.66 0.765779
Target:  5'- aGGCgGAUCuUUGACauguuuauGCCGACGGUugccgccGCCCu -3'
miRNA:   3'- gCUG-CUAG-AGCUG--------UGGUUGCCG-------CGGG- -5'
12418 5' -55.7 NC_003324.1 + 15238 0.66 0.756775
Target:  5'- cCGGCGAUggagaUCGGCGgCGAgccuuuucacgUGGCGCCg -3'
miRNA:   3'- -GCUGCUAg----AGCUGUgGUU-----------GCCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 30221 0.66 0.756775
Target:  5'- aGACGAUUUcCGACAacgcagcuauCCAGCGcGuCGaCCCu -3'
miRNA:   3'- gCUGCUAGA-GCUGU----------GGUUGC-C-GC-GGG- -5'
12418 5' -55.7 NC_003324.1 + 48273 0.66 0.756775
Target:  5'- aGugG-UCUCGGagaACCAGCGaacGCGgCCg -3'
miRNA:   3'- gCugCuAGAGCUg--UGGUUGC---CGCgGG- -5'
12418 5' -55.7 NC_003324.1 + 23788 0.66 0.755768
Target:  5'- cCGGCGGacaUCgaggcagUCGACAUCGAugugaagccCGGCGCgCCg -3'
miRNA:   3'- -GCUGCU---AG-------AGCUGUGGUU---------GCCGCG-GG- -5'
12418 5' -55.7 NC_003324.1 + 41081 0.66 0.755768
Target:  5'- aCGACGAUcCUCGAC-CUgaucuauGACGcauGCgGCCCg -3'
miRNA:   3'- -GCUGCUA-GAGCUGuGG-------UUGC---CG-CGGG- -5'
12418 5' -55.7 NC_003324.1 + 49054 0.66 0.750717
Target:  5'- gCGGCGGggcaauccauccggCUCuGCACCGgggccgaaaGCGGCGUCUa -3'
miRNA:   3'- -GCUGCUa-------------GAGcUGUGGU---------UGCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 23893 0.66 0.750717
Target:  5'- uCGACGAUCgcgucCGcagguuugccguagaGCGCCGACauGGCGUCg -3'
miRNA:   3'- -GCUGCUAGa----GC---------------UGUGGUUG--CCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 54871 0.66 0.746656
Target:  5'- gCGGCGGUCUgCGAUGCgAGCGa-GCUCg -3'
miRNA:   3'- -GCUGCUAGA-GCUGUGgUUGCcgCGGG- -5'
12418 5' -55.7 NC_003324.1 + 35148 0.66 0.746656
Target:  5'- -aGCGccUUCGuCACCuuCGGCGCCg -3'
miRNA:   3'- gcUGCuaGAGCuGUGGuuGCCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 18001 0.66 0.746656
Target:  5'- uGuCGAUCgcuUCgGAUACCGAuuggcCGGCGCCa -3'
miRNA:   3'- gCuGCUAG---AG-CUGUGGUU-----GCCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 25231 0.66 0.746656
Target:  5'- uGACGGU-UCGAgCACC--UGGCcGCCCu -3'
miRNA:   3'- gCUGCUAgAGCU-GUGGuuGCCG-CGGG- -5'
12418 5' -55.7 NC_003324.1 + 56106 0.66 0.746656
Target:  5'- uGGCGAUCUUcuugACC-ACGGCGCgCu -3'
miRNA:   3'- gCUGCUAGAGcug-UGGuUGCCGCGgG- -5'
12418 5' -55.7 NC_003324.1 + 55048 0.66 0.736425
Target:  5'- gGACGG-CUgGGCugCcgcGACGGCGCa- -3'
miRNA:   3'- gCUGCUaGAgCUGugG---UUGCCGCGgg -5'
12418 5' -55.7 NC_003324.1 + 55352 0.66 0.736425
Target:  5'- -cGCGAUCaagacgCGGCACCGGauauuCGaGCGCCUu -3'
miRNA:   3'- gcUGCUAGa-----GCUGUGGUU-----GC-CGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.