Results 1 - 20 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12418 | 5' | -55.7 | NC_003324.1 | + | 51001 | 0.66 | 0.766773 |
Target: 5'- uCGACGAggCUCGGacgaagGCCGACGaaaugGCCCa -3' miRNA: 3'- -GCUGCUa-GAGCUg-----UGGUUGCcg---CGGG- -5' |
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12418 | 5' | -55.7 | NC_003324.1 | + | 53977 | 0.66 | 0.766773 |
Target: 5'- uGAUGAUCUUG-CGgCGG-GGCGCaCCa -3' miRNA: 3'- gCUGCUAGAGCuGUgGUUgCCGCG-GG- -5' |
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12418 | 5' | -55.7 | NC_003324.1 | + | 55928 | 0.66 | 0.766773 |
Target: 5'- gGAUGAUgC-CGACACCGACGacGUGUUCc -3' miRNA: 3'- gCUGCUA-GaGCUGUGGUUGC--CGCGGG- -5' |
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12418 | 5' | -55.7 | NC_003324.1 | + | 18786 | 0.66 | 0.766773 |
Target: 5'- --uCGAUCUCGGCAacgaugcgcggguCCAuggcgcggcgaagguCGGCGCCa -3' miRNA: 3'- gcuGCUAGAGCUGU-------------GGUu--------------GCCGCGGg -5' |
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12418 | 5' | -55.7 | NC_003324.1 | + | 35464 | 0.66 | 0.766773 |
Target: 5'- uCGGCGAUgUCGGCGagcgugggGACGGCGaucgCCg -3' miRNA: 3'- -GCUGCUAgAGCUGUgg------UUGCCGCg---GG- -5' |
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12418 | 5' | -55.7 | NC_003324.1 | + | 3375 | 0.66 | 0.765779 |
Target: 5'- aGGCgGAUCuUUGACauguuuauGCCGACGGUugccgccGCCCu -3' miRNA: 3'- gCUG-CUAG-AGCUG--------UGGUUGCCG-------CGGG- -5' |
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12418 | 5' | -55.7 | NC_003324.1 | + | 30221 | 0.66 | 0.756775 |
Target: 5'- aGACGAUUUcCGACAacgcagcuauCCAGCGcGuCGaCCCu -3' miRNA: 3'- gCUGCUAGA-GCUGU----------GGUUGC-C-GC-GGG- -5' |
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12418 | 5' | -55.7 | NC_003324.1 | + | 48273 | 0.66 | 0.756775 |
Target: 5'- aGugG-UCUCGGagaACCAGCGaacGCGgCCg -3' miRNA: 3'- gCugCuAGAGCUg--UGGUUGC---CGCgGG- -5' |
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12418 | 5' | -55.7 | NC_003324.1 | + | 15238 | 0.66 | 0.756775 |
Target: 5'- cCGGCGAUggagaUCGGCGgCGAgccuuuucacgUGGCGCCg -3' miRNA: 3'- -GCUGCUAg----AGCUGUgGUU-----------GCCGCGGg -5' |
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12418 | 5' | -55.7 | NC_003324.1 | + | 41081 | 0.66 | 0.755768 |
Target: 5'- aCGACGAUcCUCGAC-CUgaucuauGACGcauGCgGCCCg -3' miRNA: 3'- -GCUGCUA-GAGCUGuGG-------UUGC---CG-CGGG- -5' |
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12418 | 5' | -55.7 | NC_003324.1 | + | 23788 | 0.66 | 0.755768 |
Target: 5'- cCGGCGGacaUCgaggcagUCGACAUCGAugugaagccCGGCGCgCCg -3' miRNA: 3'- -GCUGCU---AG-------AGCUGUGGUU---------GCCGCG-GG- -5' |
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12418 | 5' | -55.7 | NC_003324.1 | + | 23893 | 0.66 | 0.750717 |
Target: 5'- uCGACGAUCgcgucCGcagguuugccguagaGCGCCGACauGGCGUCg -3' miRNA: 3'- -GCUGCUAGa----GC---------------UGUGGUUG--CCGCGGg -5' |
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12418 | 5' | -55.7 | NC_003324.1 | + | 49054 | 0.66 | 0.750717 |
Target: 5'- gCGGCGGggcaauccauccggCUCuGCACCGgggccgaaaGCGGCGUCUa -3' miRNA: 3'- -GCUGCUa-------------GAGcUGUGGU---------UGCCGCGGG- -5' |
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12418 | 5' | -55.7 | NC_003324.1 | + | 56106 | 0.66 | 0.746656 |
Target: 5'- uGGCGAUCUUcuugACC-ACGGCGCgCu -3' miRNA: 3'- gCUGCUAGAGcug-UGGuUGCCGCGgG- -5' |
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12418 | 5' | -55.7 | NC_003324.1 | + | 35148 | 0.66 | 0.746656 |
Target: 5'- -aGCGccUUCGuCACCuuCGGCGCCg -3' miRNA: 3'- gcUGCuaGAGCuGUGGuuGCCGCGGg -5' |
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12418 | 5' | -55.7 | NC_003324.1 | + | 25231 | 0.66 | 0.746656 |
Target: 5'- uGACGGU-UCGAgCACC--UGGCcGCCCu -3' miRNA: 3'- gCUGCUAgAGCU-GUGGuuGCCG-CGGG- -5' |
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12418 | 5' | -55.7 | NC_003324.1 | + | 18001 | 0.66 | 0.746656 |
Target: 5'- uGuCGAUCgcuUCgGAUACCGAuuggcCGGCGCCa -3' miRNA: 3'- gCuGCUAG---AG-CUGUGGUU-----GCCGCGGg -5' |
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12418 | 5' | -55.7 | NC_003324.1 | + | 54871 | 0.66 | 0.746656 |
Target: 5'- gCGGCGGUCUgCGAUGCgAGCGa-GCUCg -3' miRNA: 3'- -GCUGCUAGA-GCUGUGgUUGCcgCGGG- -5' |
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12418 | 5' | -55.7 | NC_003324.1 | + | 55352 | 0.66 | 0.736425 |
Target: 5'- -cGCGAUCaagacgCGGCACCGGauauuCGaGCGCCUu -3' miRNA: 3'- gcUGCUAGa-----GCUGUGGUU-----GC-CGCGGG- -5' |
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12418 | 5' | -55.7 | NC_003324.1 | + | 55048 | 0.66 | 0.736425 |
Target: 5'- gGACGG-CUgGGCugCcgcGACGGCGCa- -3' miRNA: 3'- gCUGCUaGAgCUGugG---UUGCCGCGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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