miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12419 3' -54.3 NC_003324.1 + 20787 0.66 0.807625
Target:  5'- -cGCCGGAACgUUgGcgaGGCGGCggACCg -3'
miRNA:   3'- guUGGCUUUGgAGgCaa-CCGCCG--UGG- -5'
12419 3' -54.3 NC_003324.1 + 30684 0.66 0.807625
Target:  5'- -cACCau-GCUUCCG--GGCGGCAUCc -3'
miRNA:   3'- guUGGcuuUGGAGGCaaCCGCCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 42389 0.66 0.798066
Target:  5'- -cACCGgcGCCcggCaCGUggcaGGCGGCGCa -3'
miRNA:   3'- guUGGCuuUGGa--G-GCAa---CCGCCGUGg -5'
12419 3' -54.3 NC_003324.1 + 44436 0.66 0.798066
Target:  5'- -cGCCGAGACUUCgGUcgcugaUGGcCGGCGu- -3'
miRNA:   3'- guUGGCUUUGGAGgCA------ACC-GCCGUgg -5'
12419 3' -54.3 NC_003324.1 + 23628 0.66 0.788335
Target:  5'- -cGCCGAGcgcGCCcgCCGccacgcugUGG-GGCACCg -3'
miRNA:   3'- guUGGCUU---UGGa-GGCa-------ACCgCCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 33780 0.66 0.788335
Target:  5'- -cACCGAAggauuggaaGCCUgUGaugccUUGGCGGCAgCg -3'
miRNA:   3'- guUGGCUU---------UGGAgGC-----AACCGCCGUgG- -5'
12419 3' -54.3 NC_003324.1 + 26682 0.66 0.778441
Target:  5'- gGAUCGAuGCCgCUGUUGaGCGuGCuACCg -3'
miRNA:   3'- gUUGGCUuUGGaGGCAAC-CGC-CG-UGG- -5'
12419 3' -54.3 NC_003324.1 + 4932 0.66 0.778441
Target:  5'- uCGACCG--GCCgcaaCGUUGuugcCGGCGCCa -3'
miRNA:   3'- -GUUGGCuuUGGag--GCAACc---GCCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 27687 0.66 0.768397
Target:  5'- -cGCCGAGcuUCUCC-UUGGCGauguGCGCCu -3'
miRNA:   3'- guUGGCUUu-GGAGGcAACCGC----CGUGG- -5'
12419 3' -54.3 NC_003324.1 + 28538 0.66 0.768397
Target:  5'- -cACUGAGGCCUgCCGcgcucaacaUGGCGGCGu- -3'
miRNA:   3'- guUGGCUUUGGA-GGCa--------ACCGCCGUgg -5'
12419 3' -54.3 NC_003324.1 + 29315 0.67 0.758212
Target:  5'- --cCCGAAcaGCCgCCGUcuUGGUGagcGCACCg -3'
miRNA:   3'- guuGGCUU--UGGaGGCA--ACCGC---CGUGG- -5'
12419 3' -54.3 NC_003324.1 + 53643 0.67 0.758212
Target:  5'- cCAAaaGAAcuACCgCCGU--GCGGCACCu -3'
miRNA:   3'- -GUUggCUU--UGGaGGCAacCGCCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 25011 0.67 0.758212
Target:  5'- uCGAUCGAGACaCUgCGaccgGGCGGCguGCUg -3'
miRNA:   3'- -GUUGGCUUUG-GAgGCaa--CCGCCG--UGG- -5'
12419 3' -54.3 NC_003324.1 + 54877 0.67 0.7479
Target:  5'- --cCCGGAugCUCgCGaUGuCGGCGCCc -3'
miRNA:   3'- guuGGCUUugGAG-GCaACcGCCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 19284 0.67 0.73747
Target:  5'- -uGCCGAacAACUcCCGgcccuugGGCGGCAUa -3'
miRNA:   3'- guUGGCU--UUGGaGGCaa-----CCGCCGUGg -5'
12419 3' -54.3 NC_003324.1 + 42005 0.67 0.73747
Target:  5'- gAACgCGguACCUCCGgauGCGGCgACUg -3'
miRNA:   3'- gUUG-GCuuUGGAGGCaacCGCCG-UGG- -5'
12419 3' -54.3 NC_003324.1 + 20707 0.67 0.716305
Target:  5'- aAGCCaaagggcaaGGAGCCUaCCGUcgaagucacUGGCgacGGCGCCa -3'
miRNA:   3'- gUUGG---------CUUUGGA-GGCA---------ACCG---CCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 45995 0.67 0.716305
Target:  5'- -uGCUuc-GCUUCCGaagcGGCGGCGCCg -3'
miRNA:   3'- guUGGcuuUGGAGGCaa--CCGCCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 34068 0.67 0.716305
Target:  5'- cCGACCGAAucgggcuccGCCuuUCCGUcgGGCgGGUGCUu -3'
miRNA:   3'- -GUUGGCUU---------UGG--AGGCAa-CCG-CCGUGG- -5'
12419 3' -54.3 NC_003324.1 + 28497 0.67 0.715238
Target:  5'- aCAGCCGAGACauccccaUCCauccgagcccgcuGUUgGGCGGUAUCc -3'
miRNA:   3'- -GUUGGCUUUGg------AGG-------------CAA-CCGCCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.