Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12426 | 3' | -58.8 | NC_003324.1 | + | 41583 | 0.69 | 0.412873 |
Target: 5'- aGGUGGCCGUCCCUCgcucGGgaaaGCCCcucuGCGa -3' miRNA: 3'- -CCGUUGGCAGGGGG----UCag--CGGGu---UGC- -5' |
|||||||
12426 | 3' | -58.8 | NC_003324.1 | + | 42755 | 0.69 | 0.395064 |
Target: 5'- cGGUuGCCGg-UCCUGGUgGCCCGGCGa -3' miRNA: 3'- -CCGuUGGCagGGGGUCAgCGGGUUGC- -5' |
|||||||
12426 | 3' | -58.8 | NC_003324.1 | + | 2924 | 0.7 | 0.335995 |
Target: 5'- -uCGGCCGuugacgcUCCCCC--UCGCCCGGCGa -3' miRNA: 3'- ccGUUGGC-------AGGGGGucAGCGGGUUGC- -5' |
|||||||
12426 | 3' | -58.8 | NC_003324.1 | + | 55121 | 0.7 | 0.328984 |
Target: 5'- cGGCAgcccaGCCGUCCgCCuugccUGCCCGGCGc -3' miRNA: 3'- -CCGU-----UGGCAGGgGGuca--GCGGGUUGC- -5' |
|||||||
12426 | 3' | -58.8 | NC_003324.1 | + | 40567 | 0.7 | 0.328984 |
Target: 5'- cGGCAcuACCGUgUCgUCAuGUCGCCCGAUGu -3' miRNA: 3'- -CCGU--UGGCAgGG-GGU-CAGCGGGUUGC- -5' |
|||||||
12426 | 3' | -58.8 | NC_003324.1 | + | 35556 | 0.71 | 0.313793 |
Target: 5'- cGGCGaucGCCGUCCCCaCGcUCGCCgacaucgcCGACGu -3' miRNA: 3'- -CCGU---UGGCAGGGG-GUcAGCGG--------GUUGC- -5' |
|||||||
12426 | 3' | -58.8 | NC_003324.1 | + | 10603 | 1.1 | 0.000478 |
Target: 5'- cGGCAACCGUCCCCCAGUCGCCCAACGc -3' miRNA: 3'- -CCGUUGGCAGGGGGUCAGCGGGUUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home