miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12431 5' -57.1 NC_003324.1 + 42252 0.66 0.645143
Target:  5'- uGCCGucguuCGGCAAGUacGAUCgCGGcCCAu -3'
miRNA:   3'- gCGGCu----GCCGUUCGa-CUAG-GUCuGGU- -5'
12431 5' -57.1 NC_003324.1 + 5255 0.66 0.645143
Target:  5'- cCGCCGcaccaGCGGCAGGCgauAUCCucGAUCu -3'
miRNA:   3'- -GCGGC-----UGCCGUUCGac-UAGGu-CUGGu -5'
12431 5' -57.1 NC_003324.1 + 2176 0.66 0.645143
Target:  5'- uGCCGACaGCGcaggAGCUGcUCacgGGGCCGa -3'
miRNA:   3'- gCGGCUGcCGU----UCGACuAGg--UCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 32414 0.66 0.634269
Target:  5'- uGCCGcuaGGCAGGCcaugcagGAUCCGGAg-- -3'
miRNA:   3'- gCGGCug-CCGUUCGa------CUAGGUCUggu -5'
12431 5' -57.1 NC_003324.1 + 42871 0.66 0.634269
Target:  5'- uGCCGGcCGGCccGCgagGAUCUGcGACCGa -3'
miRNA:   3'- gCGGCU-GCCGuuCGa--CUAGGU-CUGGU- -5'
12431 5' -57.1 NC_003324.1 + 29231 0.66 0.623392
Target:  5'- gCGCUcaccaaGACGGC-GGCUG-UUCGGGCCu -3'
miRNA:   3'- -GCGG------CUGCCGuUCGACuAGGUCUGGu -5'
12431 5' -57.1 NC_003324.1 + 35465 0.66 0.623392
Target:  5'- gCGCgGGCGGCcgagcAGGCUGcagcagCaCAGGCCGa -3'
miRNA:   3'- -GCGgCUGCCG-----UUCGACua----G-GUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 34906 0.66 0.623392
Target:  5'- uCGaCGACGGCGAGCUG---CAGGCgAa -3'
miRNA:   3'- -GCgGCUGCCGUUCGACuagGUCUGgU- -5'
12431 5' -57.1 NC_003324.1 + 44458 0.66 0.623392
Target:  5'- gGCCGgcguuugaaACGGCGauugAGCUGcuugcgCCGGACCc -3'
miRNA:   3'- gCGGC---------UGCCGU----UCGACua----GGUCUGGu -5'
12431 5' -57.1 NC_003324.1 + 29922 0.66 0.623392
Target:  5'- uGCUgGACGGCGcGGCccacGGUCCGGACgGg -3'
miRNA:   3'- gCGG-CUGCCGU-UCGa---CUAGGUCUGgU- -5'
12431 5' -57.1 NC_003324.1 + 39839 0.66 0.623392
Target:  5'- aGCCGGUGGCAcgcuuguagaGGCUG-UCCucGACCu -3'
miRNA:   3'- gCGGCUGCCGU----------UCGACuAGGu-CUGGu -5'
12431 5' -57.1 NC_003324.1 + 38906 0.66 0.623392
Target:  5'- aGCCu-CGGCAAGCgccacgccUCCAuGACCAu -3'
miRNA:   3'- gCGGcuGCCGUUCGacu-----AGGU-CUGGU- -5'
12431 5' -57.1 NC_003324.1 + 47906 0.66 0.612524
Target:  5'- gCGCCGAUGGCcGGCUuAUCCgcuGGGUCGa -3'
miRNA:   3'- -GCGGCUGCCGuUCGAcUAGG---UCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 39460 0.67 0.580053
Target:  5'- aGCCG-CaGGCAAGCUGcuucgCCGGAUg- -3'
miRNA:   3'- gCGGCuG-CCGUUCGACua---GGUCUGgu -5'
12431 5' -57.1 NC_003324.1 + 22166 0.67 0.578976
Target:  5'- aCGCCGAUGuaGgAGGcCUGAUCCGGAgaacgcuCCAc -3'
miRNA:   3'- -GCGGCUGC--CgUUC-GACUAGGUCU-------GGU- -5'
12431 5' -57.1 NC_003324.1 + 40686 0.67 0.569303
Target:  5'- gGCgGAUGGCcccAGC-GAaCCGGACCAc -3'
miRNA:   3'- gCGgCUGCCGu--UCGaCUaGGUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 12394 0.67 0.569303
Target:  5'- aGCCGACGuugcGCGAGUauuUCuCAGGCCAc -3'
miRNA:   3'- gCGGCUGC----CGUUCGacuAG-GUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 49571 0.67 0.569303
Target:  5'- gGuuGAagaaCGGCAccgucguugaGGCUGA-CCAGACCu -3'
miRNA:   3'- gCggCU----GCCGU----------UCGACUaGGUCUGGu -5'
12431 5' -57.1 NC_003324.1 + 33051 0.67 0.54796
Target:  5'- uGgCGACGGCGAGCaGAUgCAgcgcguGACCu -3'
miRNA:   3'- gCgGCUGCCGUUCGaCUAgGU------CUGGu -5'
12431 5' -57.1 NC_003324.1 + 34591 0.67 0.523737
Target:  5'- cCGCUGGCGGCAAGaagGAcCCGacgaacaagacgccGGCCAa -3'
miRNA:   3'- -GCGGCUGCCGUUCga-CUaGGU--------------CUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.