miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12438 5' -54.9 NC_003324.1 + 28335 0.66 0.78717
Target:  5'- uUCCacCGAUC-CGGCAccagucgcagcaguCGAUGaCGCGGc -3'
miRNA:   3'- -AGGa-GCUAGaGCCGUu-------------GCUAC-GCGCC- -5'
12438 5' -54.9 NC_003324.1 + 13447 0.76 0.262634
Target:  5'- aUCCUCGAUCcguaCGGCAGCGcGUcgcauguuugguccgGCGCGGc -3'
miRNA:   3'- -AGGAGCUAGa---GCCGUUGC-UA---------------CGCGCC- -5'
12438 5' -54.9 NC_003324.1 + 51988 0.7 0.51835
Target:  5'- aUCUCGAUCUCGuCGAUguucugcuuGAUGaCGCGGa -3'
miRNA:   3'- aGGAGCUAGAGCcGUUG---------CUAC-GCGCC- -5'
12438 5' -54.9 NC_003324.1 + 16431 0.7 0.51835
Target:  5'- gUCCUggacgacgCGAUCgaCGGCAACGccGuCGCGGa -3'
miRNA:   3'- -AGGA--------GCUAGa-GCCGUUGCuaC-GCGCC- -5'
12438 5' -54.9 NC_003324.1 + 43651 0.69 0.581983
Target:  5'- cCCUCaa--UCGGCuGACGuUGCGCGGc -3'
miRNA:   3'- aGGAGcuagAGCCG-UUGCuACGCGCC- -5'
12438 5' -54.9 NC_003324.1 + 29729 0.68 0.657895
Target:  5'- -aCUCGAUCccggcucaggCGGCGGCGuUGCGCc- -3'
miRNA:   3'- agGAGCUAGa---------GCCGUUGCuACGCGcc -5'
12438 5' -54.9 NC_003324.1 + 22780 0.79 0.157811
Target:  5'- cCUUCGAcgagCUCGGCGugGAUGCGCu- -3'
miRNA:   3'- aGGAGCUa---GAGCCGUugCUACGCGcc -5'
12438 5' -54.9 NC_003324.1 + 8746 0.74 0.317077
Target:  5'- aUCCa-GAUCUUGGCGGCGGUGU-CGGa -3'
miRNA:   3'- -AGGagCUAGAGCCGUUGCUACGcGCC- -5'
12438 5' -54.9 NC_003324.1 + 57037 0.7 0.5393
Target:  5'- -gCUgGGgagCGGCGGCGAggGCGCGGa -3'
miRNA:   3'- agGAgCUagaGCCGUUGCUa-CGCGCC- -5'
12438 5' -54.9 NC_003324.1 + 18406 0.67 0.694555
Target:  5'- aUCCUCGGcgcccgcuuuggcggUCUCaccaaggccggGGCAGCGAUugcccGCGCGu -3'
miRNA:   3'- -AGGAGCU---------------AGAG-----------CCGUUGCUA-----CGCGCc -5'
12438 5' -54.9 NC_003324.1 + 57398 0.66 0.782286
Target:  5'- gUCCUCacugcugGAgggCUCGGCGgagGCGA-GgGCGGc -3'
miRNA:   3'- -AGGAG-------CUa--GAGCCGU---UGCUaCgCGCC- -5'
12438 5' -54.9 NC_003324.1 + 40068 0.66 0.763391
Target:  5'- cCCUCGccacgCUCGGCGcgACGGacuuggagauUGCGCaGGc -3'
miRNA:   3'- aGGAGCua---GAGCCGU--UGCU----------ACGCG-CC- -5'
12438 5' -54.9 NC_003324.1 + 17710 0.71 0.45766
Target:  5'- aUCCUCGGgcccgagCUCGGCGgcaucgugcucaACGgcGCGcCGGg -3'
miRNA:   3'- -AGGAGCUa------GAGCCGU------------UGCuaCGC-GCC- -5'
12438 5' -54.9 NC_003324.1 + 26650 0.79 0.157811
Target:  5'- gUC-CGAUCUCGGCGAgGAUGUGCGu -3'
miRNA:   3'- aGGaGCUAGAGCCGUUgCUACGCGCc -5'
12438 5' -54.9 NC_003324.1 + 39773 0.67 0.732621
Target:  5'- -gCUCGAugaUCUCGGC-ACGGUGCa--- -3'
miRNA:   3'- agGAGCU---AGAGCCGuUGCUACGcgcc -5'
12438 5' -54.9 NC_003324.1 + 24278 0.67 0.711598
Target:  5'- cUCgUCGAUCUgGGCAcggcggagcuugGCGAaggcGuCGCGGa -3'
miRNA:   3'- -AGgAGCUAGAgCCGU------------UGCUa---C-GCGCC- -5'
12438 5' -54.9 NC_003324.1 + 19150 0.67 0.702032
Target:  5'- gUCCUUGAUCUUcuggagcgucugcuuGUAGCGGuccucUGCGCGGc -3'
miRNA:   3'- -AGGAGCUAGAGc--------------CGUUGCU-----ACGCGCC- -5'
12438 5' -54.9 NC_003324.1 + 54434 0.68 0.679518
Target:  5'- gCCUCGA-CUgggucauagcCGGCGGCGAga-GCGGa -3'
miRNA:   3'- aGGAGCUaGA----------GCCGUUGCUacgCGCC- -5'
12438 5' -54.9 NC_003324.1 + 15118 0.72 0.438282
Target:  5'- gCCaUCGGUCUCGGCGuCGAcacgGCGCc- -3'
miRNA:   3'- aGG-AGCUAGAGCCGUuGCUa---CGCGcc -5'
12438 5' -54.9 NC_003324.1 + 17555 0.7 0.549883
Target:  5'- aCCaaaGGUC-CGGCAugcCGAUGCGCGa -3'
miRNA:   3'- aGGag-CUAGaGCCGUu--GCUACGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.