miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12445 5' -53.7 NC_003324.1 + 41556 0.66 0.843205
Target:  5'- -cGACAgcgGCGCgGGCCUGUuccucgcagguggcCGUCCc -3'
miRNA:   3'- gcUUGUaa-CGCGgCUGGACGu-------------GCAGG- -5'
12445 5' -53.7 NC_003324.1 + 19116 0.66 0.843205
Target:  5'- -cGGCAUUGCGCUugucgaucccggucaGGCC--CGCGUCCu -3'
miRNA:   3'- gcUUGUAACGCGG---------------CUGGacGUGCAGG- -5'
12445 5' -53.7 NC_003324.1 + 20737 0.66 0.837065
Target:  5'- uCGAGCGcagGCGCCugcuucucgaugucGGCCaUGCGCuccuuGUCCa -3'
miRNA:   3'- -GCUUGUaa-CGCGG--------------CUGG-ACGUG-----CAGG- -5'
12445 5' -53.7 NC_003324.1 + 10278 0.66 0.83082
Target:  5'- -uGAUAUUgGCGCCGAUgaGCACuagCCg -3'
miRNA:   3'- gcUUGUAA-CGCGGCUGgaCGUGca-GG- -5'
12445 5' -53.7 NC_003324.1 + 31166 0.66 0.83082
Target:  5'- gGAGC--UGC-CCGGCCUGCGCcaUCa -3'
miRNA:   3'- gCUUGuaACGcGGCUGGACGUGcaGG- -5'
12445 5' -53.7 NC_003324.1 + 28717 0.66 0.83082
Target:  5'- uGGGCAg-GCGCCGAaaCCUGCucugcaguucccGCG-CCg -3'
miRNA:   3'- gCUUGUaaCGCGGCU--GGACG------------UGCaGG- -5'
12445 5' -53.7 NC_003324.1 + 20600 0.66 0.83082
Target:  5'- uGGGCGcUUGCgGUCGGCggGCACGcCCu -3'
miRNA:   3'- gCUUGU-AACG-CGGCUGgaCGUGCaGG- -5'
12445 5' -53.7 NC_003324.1 + 32287 0.66 0.821722
Target:  5'- aGAACAcgcugGCGacaaCGGCCucUGCGCGgcgCCg -3'
miRNA:   3'- gCUUGUaa---CGCg---GCUGG--ACGUGCa--GG- -5'
12445 5' -53.7 NC_003324.1 + 27531 0.66 0.821722
Target:  5'- gGAACAgagcGCGCgGACCUGUuucgggcuCGgcugCCg -3'
miRNA:   3'- gCUUGUaa--CGCGgCUGGACGu-------GCa---GG- -5'
12445 5' -53.7 NC_003324.1 + 26543 0.66 0.802937
Target:  5'- uCGAGCAauugaUGuCGCCGACaUUGC-CGUCg -3'
miRNA:   3'- -GCUUGUa----AC-GCGGCUG-GACGuGCAGg -5'
12445 5' -53.7 NC_003324.1 + 7814 0.66 0.802937
Target:  5'- uCGGACAUaggcaggccaUGCgGCCGugCUGaccuCGUUCg -3'
miRNA:   3'- -GCUUGUA----------ACG-CGGCugGACgu--GCAGG- -5'
12445 5' -53.7 NC_003324.1 + 13329 0.67 0.793271
Target:  5'- -cGACGcUUGCgGCCaugauGACCUGCGCGaUCUg -3'
miRNA:   3'- gcUUGU-AACG-CGG-----CUGGACGUGC-AGG- -5'
12445 5' -53.7 NC_003324.1 + 21657 0.67 0.773445
Target:  5'- cCGAAgAUggGCGCCGguACCa--ACGUCCa -3'
miRNA:   3'- -GCUUgUAa-CGCGGC--UGGacgUGCAGG- -5'
12445 5' -53.7 NC_003324.1 + 21093 0.67 0.773445
Target:  5'- gCGGcGCGUgcUGCGUCGGCUUcCACGUCg -3'
miRNA:   3'- -GCU-UGUA--ACGCGGCUGGAcGUGCAGg -5'
12445 5' -53.7 NC_003324.1 + 55577 0.67 0.773445
Target:  5'- uCGAGCGaacGC-CCGACC-GCAUGUUCu -3'
miRNA:   3'- -GCUUGUaa-CGcGGCUGGaCGUGCAGG- -5'
12445 5' -53.7 NC_003324.1 + 55329 0.67 0.763308
Target:  5'- --cGCGcgGUGCCGuCCgccgGCACGUCg -3'
miRNA:   3'- gcuUGUaaCGCGGCuGGa---CGUGCAGg -5'
12445 5' -53.7 NC_003324.1 + 20516 0.67 0.753035
Target:  5'- aGGGCGUgccCGCCGACC-GCaaGCGcCCa -3'
miRNA:   3'- gCUUGUAac-GCGGCUGGaCG--UGCaGG- -5'
12445 5' -53.7 NC_003324.1 + 18898 0.67 0.74264
Target:  5'- gGAGacugGCGCCGACCUucGcCGCG-CCa -3'
miRNA:   3'- gCUUguaaCGCGGCUGGA--C-GUGCaGG- -5'
12445 5' -53.7 NC_003324.1 + 22013 0.68 0.710829
Target:  5'- aCGAggcGCAUgucgaGCGCa-GCCUugcGCGCGUCCg -3'
miRNA:   3'- -GCU---UGUAa----CGCGgcUGGA---CGUGCAGG- -5'
12445 5' -53.7 NC_003324.1 + 28631 0.68 0.710829
Target:  5'- cCGGAuCGUUGCggGCCG-CCUugucGCGCGUCg -3'
miRNA:   3'- -GCUU-GUAACG--CGGCuGGA----CGUGCAGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.