miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12462 3' -56.1 NC_003324.1 + 20493 0.66 0.694607
Target:  5'- ---aCCGCuugCGAUCGACGau-GACGGCu -3'
miRNA:   3'- guaaGGCG---GCUGGCUGUgcuCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 54075 0.66 0.726094
Target:  5'- --aUCgGCCGACCGGCuCGAcauccaguuuguGACGaaGCg -3'
miRNA:   3'- guaAGgCGGCUGGCUGuGCU------------CUGC--CG- -5'
12462 3' -56.1 NC_003324.1 + 2687 0.66 0.736425
Target:  5'- ---gCCGCuuCGGCaagGGCACGAugucGGCGGCg -3'
miRNA:   3'- guaaGGCG--GCUGg--CUGUGCU----CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 2418 0.66 0.736425
Target:  5'- ----aCGCCGaugaugaagccGCCGACGCc-GGCGGCu -3'
miRNA:   3'- guaagGCGGC-----------UGGCUGUGcuCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 5965 0.66 0.736425
Target:  5'- ---cCCGCCGAauGGCuaugcagcGCGAGcACGGUg -3'
miRNA:   3'- guaaGGCGGCUggCUG--------UGCUC-UGCCG- -5'
12462 3' -56.1 NC_003324.1 + 23517 0.66 0.736425
Target:  5'- gGUUCCaaccCCGGCaCGAUcggugccccacaGCGuGGCGGCg -3'
miRNA:   3'- gUAAGGc---GGCUG-GCUG------------UGCuCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 47602 0.66 0.736425
Target:  5'- aGUUCCGuCCGAgcuuuaccaCGcCGCGcauGACGGCg -3'
miRNA:   3'- gUAAGGC-GGCUg--------GCuGUGCu--CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 17506 0.66 0.726094
Target:  5'- --cUCCGCgucaGACCGACgaggGCGAcgUGGCa -3'
miRNA:   3'- guaAGGCGg---CUGGCUG----UGCUcuGCCG- -5'
12462 3' -56.1 NC_003324.1 + 55515 0.67 0.673309
Target:  5'- ---cCUGCCGGCCucGACACguucaugaagGAGAuCGGCc -3'
miRNA:   3'- guaaGGCGGCUGG--CUGUG----------CUCU-GCCG- -5'
12462 3' -56.1 NC_003324.1 + 54808 0.67 0.651862
Target:  5'- ---aCCGCCGcGCCGuuCGCGgugAGAcCGGCa -3'
miRNA:   3'- guaaGGCGGC-UGGCu-GUGC---UCU-GCCG- -5'
12462 3' -56.1 NC_003324.1 + 55106 0.67 0.641108
Target:  5'- ---gCCGUCGGCauGCACGuGaACGGCa -3'
miRNA:   3'- guaaGGCGGCUGgcUGUGCuC-UGCCG- -5'
12462 3' -56.1 NC_003324.1 + 7693 0.67 0.630346
Target:  5'- ---aCCGCCGAccccggaaacaCCGGCGCGAacgaggucaGcACGGCc -3'
miRNA:   3'- guaaGGCGGCU-----------GGCUGUGCU---------C-UGCCG- -5'
12462 3' -56.1 NC_003324.1 + 8416 0.67 0.673309
Target:  5'- ---cCCGCCGACgGucaccguaACGAgcgccGACGGCg -3'
miRNA:   3'- guaaGGCGGCUGgCug------UGCU-----CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 14532 0.67 0.673309
Target:  5'- --gUCCGCCGaugcuuggacGCCGGCAUGGGcCcagagccgGGCg -3'
miRNA:   3'- guaAGGCGGC----------UGGCUGUGCUCuG--------CCG- -5'
12462 3' -56.1 NC_003324.1 + 40144 0.67 0.673309
Target:  5'- gCGUUCCgGCCaGACCcGCGCaacuacgguGGACGGCc -3'
miRNA:   3'- -GUAAGG-CGG-CUGGcUGUGc--------UCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 41853 0.67 0.662599
Target:  5'- aCAUUcCCGCCGAgcucgUCGACAuCGAGcaaAUGGUu -3'
miRNA:   3'- -GUAA-GGCGGCU-----GGCUGU-GCUC---UGCCG- -5'
12462 3' -56.1 NC_003324.1 + 33462 0.67 0.650788
Target:  5'- --cUCCGCCaguGGCCGgaguugcGCGCGgAGcCGGCa -3'
miRNA:   3'- guaAGGCGG---CUGGC-------UGUGC-UCuGCCG- -5'
12462 3' -56.1 NC_003324.1 + 54515 0.67 0.641108
Target:  5'- ---gCCGCCGGCUauGACccaguCGAGGCccGGCa -3'
miRNA:   3'- guaaGGCGGCUGG--CUGu----GCUCUG--CCG- -5'
12462 3' -56.1 NC_003324.1 + 53664 0.67 0.641108
Target:  5'- uCAUgUCGCaaaggggGACCGGCAUcAGGCGGCc -3'
miRNA:   3'- -GUAaGGCGg------CUGGCUGUGcUCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 15248 0.68 0.619585
Target:  5'- --aUCUGCgGaACCGGCGaugGAGAuCGGCg -3'
miRNA:   3'- guaAGGCGgC-UGGCUGUg--CUCU-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.