miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12462 3' -56.1 NC_003324.1 + 8425 0.69 0.534574
Target:  5'- -uUUCCGCCGGCUG-CAgGugcAGGCGGa -3'
miRNA:   3'- guAAGGCGGCUGGCuGUgC---UCUGCCg -5'
12462 3' -56.1 NC_003324.1 + 22031 0.69 0.534574
Target:  5'- --aUCgCGCCG-CCGA--CGAGAUGGCc -3'
miRNA:   3'- guaAG-GCGGCuGGCUguGCUCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 31721 0.69 0.534574
Target:  5'- --cUCCGgCGcGCCGaaggaaguGCGCGAGugGGUg -3'
miRNA:   3'- guaAGGCgGC-UGGC--------UGUGCUCugCCG- -5'
12462 3' -56.1 NC_003324.1 + 52286 0.69 0.534574
Target:  5'- -cUUCUaCCGcCCGAUuCGGGGCGGCc -3'
miRNA:   3'- guAAGGcGGCuGGCUGuGCUCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 20780 0.68 0.56505
Target:  5'- ---cCCGUgGuCCGGCGCaacggagcucgaaGAGACGGCu -3'
miRNA:   3'- guaaGGCGgCuGGCUGUG-------------CUCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 32746 0.68 0.56611
Target:  5'- ---cCCGCCGACCGGuUugGuGGCGGg -3'
miRNA:   3'- guaaGGCGGCUGGCU-GugCuCUGCCg -5'
12462 3' -56.1 NC_003324.1 + 30150 0.68 0.56611
Target:  5'- ---gCCGCagCGGCCGGuguCGCGAccGGCGGCg -3'
miRNA:   3'- guaaGGCG--GCUGGCU---GUGCU--CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 42866 0.68 0.576734
Target:  5'- gAggCUGCCGGCCGGCccGCGAGGaucuGCg -3'
miRNA:   3'- gUaaGGCGGCUGGCUG--UGCUCUgc--CG- -5'
12462 3' -56.1 NC_003324.1 + 18156 0.68 0.587401
Target:  5'- uGUUCCaCCGcGCCGAgguguggaacCGCGAaguGACGGCa -3'
miRNA:   3'- gUAAGGcGGC-UGGCU----------GUGCU---CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 2776 0.68 0.587401
Target:  5'- ---gCCGCCG-CCGACAucgugcccuugcCGAaGCGGCc -3'
miRNA:   3'- guaaGGCGGCuGGCUGU------------GCUcUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 17860 0.68 0.607761
Target:  5'- ---aUCGCCGgcaucACCGGCAUGAuggcccuGAUGGCg -3'
miRNA:   3'- guaaGGCGGC-----UGGCUGUGCU-------CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 1663 0.68 0.608835
Target:  5'- --cUgCGCCuGCUGACGCu-GACGGCg -3'
miRNA:   3'- guaAgGCGGcUGGCUGUGcuCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 20831 0.68 0.608835
Target:  5'- ----gCGCaUGGCCGACAuCGAGAagcaGGCg -3'
miRNA:   3'- guaagGCG-GCUGGCUGU-GCUCUg---CCG- -5'
12462 3' -56.1 NC_003324.1 + 56291 0.68 0.608835
Target:  5'- ---gCCGCCGAUCGAgcgauagGCGAGGCuGCc -3'
miRNA:   3'- guaaGGCGGCUGGCUg------UGCUCUGcCG- -5'
12462 3' -56.1 NC_003324.1 + 29329 0.68 0.619585
Target:  5'- uCAggCCGCUGACCGAgAgGuuuucGAcCGGCa -3'
miRNA:   3'- -GUaaGGCGGCUGGCUgUgCu----CU-GCCG- -5'
12462 3' -56.1 NC_003324.1 + 24442 0.68 0.619585
Target:  5'- aCAUUgCGCCGACCuGCACGuccuGGACa-- -3'
miRNA:   3'- -GUAAgGCGGCUGGcUGUGC----UCUGccg -5'
12462 3' -56.1 NC_003324.1 + 15248 0.68 0.619585
Target:  5'- --aUCUGCgGaACCGGCGaugGAGAuCGGCg -3'
miRNA:   3'- guaAGGCGgC-UGGCUGUg--CUCU-GCCG- -5'
12462 3' -56.1 NC_003324.1 + 15571 0.68 0.619585
Target:  5'- gGUUCagaaGUgGGCCGACACGgcagaugccaAGGCGGg -3'
miRNA:   3'- gUAAGg---CGgCUGGCUGUGC----------UCUGCCg -5'
12462 3' -56.1 NC_003324.1 + 24358 0.68 0.619585
Target:  5'- --cUCCGCCGugCccaGAUcgACGAGAaGGCc -3'
miRNA:   3'- guaAGGCGGCugG---CUG--UGCUCUgCCG- -5'
12462 3' -56.1 NC_003324.1 + 11841 0.68 0.619585
Target:  5'- --gUCCuGCgCGACCgGGC-CGGGcACGGCa -3'
miRNA:   3'- guaAGG-CG-GCUGG-CUGuGCUC-UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.