miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12462 3' -56.1 NC_003324.1 + 38035 1.12 0.000625
Target:  5'- aCAUUCCGCCGACCGACACGAGACGGCg -3'
miRNA:   3'- -GUAAGGCGGCUGGCUGUGCUCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 29349 0.82 0.08885
Target:  5'- --aUCCGCCGAUCGAgCGCGAGccCGGCg -3'
miRNA:   3'- guaAGGCGGCUGGCU-GUGCUCu-GCCG- -5'
12462 3' -56.1 NC_003324.1 + 34508 0.77 0.190303
Target:  5'- aAUgugCCGUCGGCCGACAucaccgaugcCGAGgACGGCg -3'
miRNA:   3'- gUAa--GGCGGCUGGCUGU----------GCUC-UGCCG- -5'
12462 3' -56.1 NC_003324.1 + 31243 0.76 0.216785
Target:  5'- cCAgcgCCGCCGGCCGcacuGCGCGuuuuugcGGCGGCg -3'
miRNA:   3'- -GUaa-GGCGGCUGGC----UGUGCu------CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 42388 0.73 0.338823
Target:  5'- ---aCCGgCGcCCGGCACGuggcAGGCGGCg -3'
miRNA:   3'- guaaGGCgGCuGGCUGUGC----UCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 17613 0.73 0.346894
Target:  5'- gGUUCCGaUCG-CCGACGCGGGAacugcagGGCa -3'
miRNA:   3'- gUAAGGC-GGCuGGCUGUGCUCUg------CCG- -5'
12462 3' -56.1 NC_003324.1 + 39987 0.72 0.363447
Target:  5'- uCcgUCgCGCCGAgCGugGCGAGGguguUGGCg -3'
miRNA:   3'- -GuaAG-GCGGCUgGCugUGCUCU----GCCG- -5'
12462 3' -56.1 NC_003324.1 + 23536 0.72 0.38054
Target:  5'- --aUCU-CCGACCG-CACGAgcGACGGCa -3'
miRNA:   3'- guaAGGcGGCUGGCuGUGCU--CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 30387 0.72 0.389285
Target:  5'- cCAUgCCGCCcucGACCagGAUACG-GACGGCu -3'
miRNA:   3'- -GUAaGGCGG---CUGG--CUGUGCuCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 53654 0.71 0.415379
Target:  5'- ---aCCGCCGugCGGCACcuugGAGcgccgagcuugauACGGCg -3'
miRNA:   3'- guaaGGCGGCugGCUGUG----CUC-------------UGCCG- -5'
12462 3' -56.1 NC_003324.1 + 20785 0.71 0.444425
Target:  5'- ---aCCGCCGgaaCGuugGCGAGGCGGCg -3'
miRNA:   3'- guaaGGCGGCug-GCug-UGCUCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 52679 0.71 0.444425
Target:  5'- uGUUCUGCCagauGCCGAgAUGAGcguCGGCg -3'
miRNA:   3'- gUAAGGCGGc---UGGCUgUGCUCu--GCCG- -5'
12462 3' -56.1 NC_003324.1 + 40345 0.71 0.444425
Target:  5'- ---cCCGCCaagccccgGACCGcACGCaAGGCGGCa -3'
miRNA:   3'- guaaGGCGG--------CUGGC-UGUGcUCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 9647 0.7 0.463758
Target:  5'- ---aCCGCCGgcaacGCCaACGCGcuGGGCGGCg -3'
miRNA:   3'- guaaGGCGGC-----UGGcUGUGC--UCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 47811 0.7 0.467677
Target:  5'- ---cCCGCCGGaaggaagacgaauacCUGACGCcuuauGAGGCGGCg -3'
miRNA:   3'- guaaGGCGGCU---------------GGCUGUG-----CUCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 29760 0.7 0.483522
Target:  5'- ----gUGCCGAUCGGCaaugugACGaAGACGGCg -3'
miRNA:   3'- guaagGCGGCUGGCUG------UGC-UCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 31168 0.7 0.493554
Target:  5'- gCAUUgCCGCaagGACCGGCACG-GACaaucaGGCc -3'
miRNA:   3'- -GUAA-GGCGg--CUGGCUGUGCuCUG-----CCG- -5'
12462 3' -56.1 NC_003324.1 + 16093 0.7 0.502664
Target:  5'- --gUCCGCCGuCCaugcguuugcgaaGGCugGuGAUGGCa -3'
miRNA:   3'- guaAGGCGGCuGG-------------CUGugCuCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 43930 0.7 0.503681
Target:  5'- aGUUCCGCUGcaucgggggcAUCGACaACGAuccGGCGGCc -3'
miRNA:   3'- gUAAGGCGGC----------UGGCUG-UGCU---CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 13088 0.69 0.524197
Target:  5'- ---gCCGCCGACCGcCGcCGAcgcagccucgcuGACGGUu -3'
miRNA:   3'- guaaGGCGGCUGGCuGU-GCU------------CUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.