miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12462 3' -56.1 NC_003324.1 + 1663 0.68 0.608835
Target:  5'- --cUgCGCCuGCUGACGCu-GACGGCg -3'
miRNA:   3'- guaAgGCGGcUGGCUGUGcuCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 2418 0.66 0.736425
Target:  5'- ----aCGCCGaugaugaagccGCCGACGCc-GGCGGCu -3'
miRNA:   3'- guaagGCGGC-----------UGGCUGUGcuCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 2529 0.66 0.726094
Target:  5'- ----aCGCC-ACCGACgaacagGCGAcgGACGGCa -3'
miRNA:   3'- guaagGCGGcUGGCUG------UGCU--CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 2687 0.66 0.736425
Target:  5'- ---gCCGCuuCGGCaagGGCACGAugucGGCGGCg -3'
miRNA:   3'- guaaGGCG--GCUGg--CUGUGCU----CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 2776 0.68 0.587401
Target:  5'- ---gCCGCCG-CCGACAucgugcccuugcCGAaGCGGCc -3'
miRNA:   3'- guaaGGCGGCuGGCUGU------------GCUcUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 4210 0.66 0.715674
Target:  5'- ---gUCGCCGGcuuCCGAUuCGAGAuCGGUg -3'
miRNA:   3'- guaaGGCGGCU---GGCUGuGCUCU-GCCG- -5'
12462 3' -56.1 NC_003324.1 + 5965 0.66 0.736425
Target:  5'- ---cCCGCCGAauGGCuaugcagcGCGAGcACGGUg -3'
miRNA:   3'- guaaGGCGGCUggCUG--------UGCUC-UGCCG- -5'
12462 3' -56.1 NC_003324.1 + 7693 0.67 0.630346
Target:  5'- ---aCCGCCGAccccggaaacaCCGGCGCGAacgaggucaGcACGGCc -3'
miRNA:   3'- guaaGGCGGCU-----------GGCUGUGCU---------C-UGCCG- -5'
12462 3' -56.1 NC_003324.1 + 8416 0.67 0.673309
Target:  5'- ---cCCGCCGACgGucaccguaACGAgcgccGACGGCg -3'
miRNA:   3'- guaaGGCGGCUGgCug------UGCU-----CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 8425 0.69 0.534574
Target:  5'- -uUUCCGCCGGCUG-CAgGugcAGGCGGa -3'
miRNA:   3'- guAAGGCGGCUGGCuGUgC---UCUGCCg -5'
12462 3' -56.1 NC_003324.1 + 9382 0.66 0.715674
Target:  5'- gGUgCCGCC-ACCGAUgACGAGGucuCGGUa -3'
miRNA:   3'- gUAaGGCGGcUGGCUG-UGCUCU---GCCG- -5'
12462 3' -56.1 NC_003324.1 + 9647 0.7 0.463758
Target:  5'- ---aCCGCCGgcaacGCCaACGCGcuGGGCGGCg -3'
miRNA:   3'- guaaGGCGGC-----UGGcUGUGC--UCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 11594 0.66 0.705174
Target:  5'- --cUCCuGCCGGa-GACugGugcGACGGCa -3'
miRNA:   3'- guaAGG-CGGCUggCUGugCu--CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 11841 0.68 0.619585
Target:  5'- --gUCCuGCgCGACCgGGC-CGGGcACGGCa -3'
miRNA:   3'- guaAGG-CG-GCUGG-CUGuGCUC-UGCCG- -5'
12462 3' -56.1 NC_003324.1 + 13088 0.69 0.524197
Target:  5'- ---gCCGCCGACCGcCGcCGAcgcagccucgcuGACGGUu -3'
miRNA:   3'- guaaGGCGGCUGGCuGU-GCU------------CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 13787 0.66 0.705174
Target:  5'- ---gCCGCCGuCCGACGCGAcACu-- -3'
miRNA:   3'- guaaGGCGGCuGGCUGUGCUcUGccg -5'
12462 3' -56.1 NC_003324.1 + 14532 0.67 0.673309
Target:  5'- --gUCCGCCGaugcuuggacGCCGGCAUGGGcCcagagccgGGCg -3'
miRNA:   3'- guaAGGCGGC----------UGGCUGUGCUCuG--------CCG- -5'
12462 3' -56.1 NC_003324.1 + 14581 0.66 0.694607
Target:  5'- ---cCUGCCGgcgcaagcgGCCGGCgGCGcAGGCGGUa -3'
miRNA:   3'- guaaGGCGGC---------UGGCUG-UGC-UCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 15248 0.68 0.619585
Target:  5'- --aUCUGCgGaACCGGCGaugGAGAuCGGCg -3'
miRNA:   3'- guaAGGCGgC-UGGCUGUg--CUCU-GCCG- -5'
12462 3' -56.1 NC_003324.1 + 15571 0.68 0.619585
Target:  5'- gGUUCagaaGUgGGCCGACACGgcagaugccaAGGCGGg -3'
miRNA:   3'- gUAAGg---CGgCUGGCUGUGC----------UCUGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.