miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12462 3' -56.1 NC_003324.1 + 55515 0.67 0.673309
Target:  5'- ---cCUGCCGGCCucGACACguucaugaagGAGAuCGGCc -3'
miRNA:   3'- guaaGGCGGCUGG--CUGUG----------CUCU-GCCG- -5'
12462 3' -56.1 NC_003324.1 + 42866 0.68 0.576734
Target:  5'- gAggCUGCCGGCCGGCccGCGAGGaucuGCg -3'
miRNA:   3'- gUaaGGCGGCUGGCUG--UGCUCUgc--CG- -5'
12462 3' -56.1 NC_003324.1 + 1663 0.68 0.608835
Target:  5'- --cUgCGCCuGCUGACGCu-GACGGCg -3'
miRNA:   3'- guaAgGCGGcUGGCUGUGcuCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 29329 0.68 0.619585
Target:  5'- uCAggCCGCUGACCGAgAgGuuuucGAcCGGCa -3'
miRNA:   3'- -GUaaGGCGGCUGGCUgUgCu----CU-GCCG- -5'
12462 3' -56.1 NC_003324.1 + 15571 0.68 0.619585
Target:  5'- gGUUCagaaGUgGGCCGACACGgcagaugccaAGGCGGg -3'
miRNA:   3'- gUAAGg---CGgCUGGCUGUGC----------UCUGCCg -5'
12462 3' -56.1 NC_003324.1 + 24442 0.68 0.619585
Target:  5'- aCAUUgCGCCGACCuGCACGuccuGGACa-- -3'
miRNA:   3'- -GUAAgGCGGCUGGcUGUGC----UCUGccg -5'
12462 3' -56.1 NC_003324.1 + 7693 0.67 0.630346
Target:  5'- ---aCCGCCGAccccggaaacaCCGGCGCGAacgaggucaGcACGGCc -3'
miRNA:   3'- guaaGGCGGCU-----------GGCUGUGCU---------C-UGCCG- -5'
12462 3' -56.1 NC_003324.1 + 55106 0.67 0.641108
Target:  5'- ---gCCGUCGGCauGCACGuGaACGGCa -3'
miRNA:   3'- guaaGGCGGCUGgcUGUGCuC-UGCCG- -5'
12462 3' -56.1 NC_003324.1 + 54808 0.67 0.651862
Target:  5'- ---aCCGCCGcGCCGuuCGCGgugAGAcCGGCa -3'
miRNA:   3'- guaaGGCGGC-UGGCu-GUGC---UCU-GCCG- -5'
12462 3' -56.1 NC_003324.1 + 32746 0.68 0.56611
Target:  5'- ---cCCGCCGACCGGuUugGuGGCGGg -3'
miRNA:   3'- guaaGGCGGCUGGCU-GugCuCUGCCg -5'
12462 3' -56.1 NC_003324.1 + 52286 0.69 0.534574
Target:  5'- -cUUCUaCCGcCCGAUuCGGGGCGGCc -3'
miRNA:   3'- guAAGGcGGCuGGCUGuGCUCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 8425 0.69 0.534574
Target:  5'- -uUUCCGCCGGCUG-CAgGugcAGGCGGa -3'
miRNA:   3'- guAAGGCGGCUGGCuGUgC---UCUGCCg -5'
12462 3' -56.1 NC_003324.1 + 31243 0.76 0.216785
Target:  5'- cCAgcgCCGCCGGCCGcacuGCGCGuuuuugcGGCGGCg -3'
miRNA:   3'- -GUaa-GGCGGCUGGC----UGUGCu------CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 39987 0.72 0.363447
Target:  5'- uCcgUCgCGCCGAgCGugGCGAGGguguUGGCg -3'
miRNA:   3'- -GuaAG-GCGGCUgGCugUGCUCU----GCCG- -5'
12462 3' -56.1 NC_003324.1 + 30387 0.72 0.389285
Target:  5'- cCAUgCCGCCcucGACCagGAUACG-GACGGCu -3'
miRNA:   3'- -GUAaGGCGG---CUGG--CUGUGCuCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 53654 0.71 0.415379
Target:  5'- ---aCCGCCGugCGGCACcuugGAGcgccgagcuugauACGGCg -3'
miRNA:   3'- guaaGGCGGCugGCUGUG----CUC-------------UGCCG- -5'
12462 3' -56.1 NC_003324.1 + 20785 0.71 0.444425
Target:  5'- ---aCCGCCGgaaCGuugGCGAGGCGGCg -3'
miRNA:   3'- guaaGGCGGCug-GCug-UGCUCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 9647 0.7 0.463758
Target:  5'- ---aCCGCCGgcaacGCCaACGCGcuGGGCGGCg -3'
miRNA:   3'- guaaGGCGGC-----UGGcUGUGC--UCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 47811 0.7 0.467677
Target:  5'- ---cCCGCCGGaaggaagacgaauacCUGACGCcuuauGAGGCGGCg -3'
miRNA:   3'- guaaGGCGGCU---------------GGCUGUG-----CUCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 13088 0.69 0.524197
Target:  5'- ---gCCGCCGACCGcCGcCGAcgcagccucgcuGACGGUu -3'
miRNA:   3'- guaaGGCGGCUGGCuGU-GCU------------CUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.