miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12462 3' -56.1 NC_003324.1 + 54515 0.67 0.641108
Target:  5'- ---gCCGCCGGCUauGACccaguCGAGGCccGGCa -3'
miRNA:   3'- guaaGGCGGCUGG--CUGu----GCUCUG--CCG- -5'
12462 3' -56.1 NC_003324.1 + 17506 0.66 0.726094
Target:  5'- --cUCCGCgucaGACCGACgaggGCGAcgUGGCa -3'
miRNA:   3'- guaAGGCGg---CUGGCUG----UGCUcuGCCG- -5'
12462 3' -56.1 NC_003324.1 + 43173 0.66 0.726094
Target:  5'- ---cCCGCUGGCgGAUgGCGAGACGa- -3'
miRNA:   3'- guaaGGCGGCUGgCUG-UGCUCUGCcg -5'
12462 3' -56.1 NC_003324.1 + 20493 0.66 0.694607
Target:  5'- ---aCCGCuugCGAUCGACGau-GACGGCu -3'
miRNA:   3'- guaaGGCG---GCUGGCUGUgcuCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 8416 0.67 0.673309
Target:  5'- ---cCCGCCGACgGucaccguaACGAgcgccGACGGCg -3'
miRNA:   3'- guaaGGCGGCUGgCug------UGCU-----CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 4210 0.66 0.715674
Target:  5'- ---gUCGCCGGcuuCCGAUuCGAGAuCGGUg -3'
miRNA:   3'- guaaGGCGGCU---GGCUGuGCUCU-GCCG- -5'
12462 3' -56.1 NC_003324.1 + 21594 0.66 0.714627
Target:  5'- cCGUggCgGCCGuCCGACcuugagcaacgcgACGGGcGCGGCa -3'
miRNA:   3'- -GUAa-GgCGGCuGGCUG-------------UGCUC-UGCCG- -5'
12462 3' -56.1 NC_003324.1 + 41721 0.66 0.702011
Target:  5'- ---gCCGCCGacgagagcgggcgaGCCGugGCaauGGugGGCg -3'
miRNA:   3'- guaaGGCGGC--------------UGGCugUGc--UCugCCG- -5'
12462 3' -56.1 NC_003324.1 + 33462 0.67 0.650788
Target:  5'- --cUCCGCCaguGGCCGgaguugcGCGCGgAGcCGGCa -3'
miRNA:   3'- guaAGGCGG---CUGGC-------UGUGC-UCuGCCG- -5'
12462 3' -56.1 NC_003324.1 + 11841 0.68 0.619585
Target:  5'- --gUCCuGCgCGACCgGGC-CGGGcACGGCa -3'
miRNA:   3'- guaAGG-CG-GCUGG-CUGuGCUC-UGCCG- -5'
12462 3' -56.1 NC_003324.1 + 29349 0.82 0.08885
Target:  5'- --aUCCGCCGAUCGAgCGCGAGccCGGCg -3'
miRNA:   3'- guaAGGCGGCUGGCU-GUGCUCu-GCCG- -5'
12462 3' -56.1 NC_003324.1 + 19844 0.66 0.715674
Target:  5'- ---gCCGCCGGggGACGCGAacaGAcCGGCc -3'
miRNA:   3'- guaaGGCGGCUggCUGUGCU---CU-GCCG- -5'
12462 3' -56.1 NC_003324.1 + 9382 0.66 0.715674
Target:  5'- gGUgCCGCC-ACCGAUgACGAGGucuCGGUa -3'
miRNA:   3'- gUAaGGCGGcUGGCUG-UGCUCU---GCCG- -5'
12462 3' -56.1 NC_003324.1 + 40144 0.67 0.673309
Target:  5'- gCGUUCCgGCCaGACCcGCGCaacuacgguGGACGGCc -3'
miRNA:   3'- -GUAAGG-CGG-CUGGcUGUGc--------UCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 41853 0.67 0.662599
Target:  5'- aCAUUcCCGCCGAgcucgUCGACAuCGAGcaaAUGGUu -3'
miRNA:   3'- -GUAA-GGCGGCU-----GGCUGU-GCUC---UGCCG- -5'
12462 3' -56.1 NC_003324.1 + 25652 0.66 0.715674
Target:  5'- ---aCCGCCGAggacaaucUCGGCGa-AGGCGGCc -3'
miRNA:   3'- guaaGGCGGCU--------GGCUGUgcUCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 15248 0.68 0.619585
Target:  5'- --aUCUGCgGaACCGGCGaugGAGAuCGGCg -3'
miRNA:   3'- guaAGGCGgC-UGGCUGUg--CUCU-GCCG- -5'
12462 3' -56.1 NC_003324.1 + 24358 0.68 0.619585
Target:  5'- --cUCCGCCGugCccaGAUcgACGAGAaGGCc -3'
miRNA:   3'- guaAGGCGGCugG---CUG--UGCUCUgCCG- -5'
12462 3' -56.1 NC_003324.1 + 13787 0.66 0.705174
Target:  5'- ---gCCGCCGuCCGACGCGAcACu-- -3'
miRNA:   3'- guaaGGCGGCuGGCUGUGCUcUGccg -5'
12462 3' -56.1 NC_003324.1 + 14532 0.67 0.673309
Target:  5'- --gUCCGCCGaugcuuggacGCCGGCAUGGGcCcagagccgGGCg -3'
miRNA:   3'- guaAGGCGGC----------UGGCUGUGCUCuG--------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.