miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12462 3' -56.1 NC_003324.1 + 16093 0.7 0.502664
Target:  5'- --gUCCGCCGuCCaugcguuugcgaaGGCugGuGAUGGCa -3'
miRNA:   3'- guaAGGCGGCuGG-------------CUGugCuCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 29349 0.82 0.08885
Target:  5'- --aUCCGCCGAUCGAgCGCGAGccCGGCg -3'
miRNA:   3'- guaAGGCGGCUGGCU-GUGCUCu-GCCG- -5'
12462 3' -56.1 NC_003324.1 + 34508 0.77 0.190303
Target:  5'- aAUgugCCGUCGGCCGACAucaccgaugcCGAGgACGGCg -3'
miRNA:   3'- gUAa--GGCGGCUGGCUGU----------GCUC-UGCCG- -5'
12462 3' -56.1 NC_003324.1 + 42388 0.73 0.338823
Target:  5'- ---aCCGgCGcCCGGCACGuggcAGGCGGCg -3'
miRNA:   3'- guaaGGCgGCuGGCUGUGC----UCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 17613 0.73 0.346894
Target:  5'- gGUUCCGaUCG-CCGACGCGGGAacugcagGGCa -3'
miRNA:   3'- gUAAGGC-GGCuGGCUGUGCUCUg------CCG- -5'
12462 3' -56.1 NC_003324.1 + 23536 0.72 0.38054
Target:  5'- --aUCU-CCGACCG-CACGAgcGACGGCa -3'
miRNA:   3'- guaAGGcGGCUGGCuGUGCU--CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 52679 0.71 0.444425
Target:  5'- uGUUCUGCCagauGCCGAgAUGAGcguCGGCg -3'
miRNA:   3'- gUAAGGCGGc---UGGCUgUGCUCu--GCCG- -5'
12462 3' -56.1 NC_003324.1 + 40345 0.71 0.444425
Target:  5'- ---cCCGCCaagccccgGACCGcACGCaAGGCGGCa -3'
miRNA:   3'- guaaGGCGG--------CUGGC-UGUGcUCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 29760 0.7 0.483522
Target:  5'- ----gUGCCGAUCGGCaaugugACGaAGACGGCg -3'
miRNA:   3'- guaagGCGGCUGGCUG------UGC-UCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 31168 0.7 0.493554
Target:  5'- gCAUUgCCGCaagGACCGGCACG-GACaaucaGGCc -3'
miRNA:   3'- -GUAA-GGCGg--CUGGCUGUGCuCUG-----CCG- -5'
12462 3' -56.1 NC_003324.1 + 17506 0.66 0.726094
Target:  5'- --cUCCGCgucaGACCGACgaggGCGAcgUGGCa -3'
miRNA:   3'- guaAGGCGg---CUGGCUG----UGCUcuGCCG- -5'
12462 3' -56.1 NC_003324.1 + 43930 0.7 0.503681
Target:  5'- aGUUCCGCUGcaucgggggcAUCGACaACGAuccGGCGGCc -3'
miRNA:   3'- gUAAGGCGGC----------UGGCUG-UGCU---CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 31721 0.69 0.534574
Target:  5'- --cUCCGgCGcGCCGaaggaaguGCGCGAGugGGUg -3'
miRNA:   3'- guaAGGCgGC-UGGC--------UGUGCUCugCCG- -5'
12462 3' -56.1 NC_003324.1 + 22031 0.69 0.534574
Target:  5'- --aUCgCGCCG-CCGA--CGAGAUGGCc -3'
miRNA:   3'- guaAG-GCGGCuGGCUguGCUCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 20780 0.68 0.56505
Target:  5'- ---cCCGUgGuCCGGCGCaacggagcucgaaGAGACGGCu -3'
miRNA:   3'- guaaGGCGgCuGGCUGUG-------------CUCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 30150 0.68 0.56611
Target:  5'- ---gCCGCagCGGCCGGuguCGCGAccGGCGGCg -3'
miRNA:   3'- guaaGGCG--GCUGGCU---GUGCU--CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 18156 0.68 0.587401
Target:  5'- uGUUCCaCCGcGCCGAgguguggaacCGCGAaguGACGGCa -3'
miRNA:   3'- gUAAGGcGGC-UGGCU----------GUGCU---CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 2776 0.68 0.587401
Target:  5'- ---gCCGCCG-CCGACAucgugcccuugcCGAaGCGGCc -3'
miRNA:   3'- guaaGGCGGCuGGCUGU------------GCUcUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 17860 0.68 0.607761
Target:  5'- ---aUCGCCGgcaucACCGGCAUGAuggcccuGAUGGCg -3'
miRNA:   3'- guaaGGCGGC-----UGGCUGUGCU-------CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 56291 0.68 0.608835
Target:  5'- ---gCCGCCGAUCGAgcgauagGCGAGGCuGCc -3'
miRNA:   3'- guaaGGCGGCUGGCUg------UGCUCUGcCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.