miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12462 3' -56.1 NC_003324.1 + 16093 0.7 0.502664
Target:  5'- --gUCCGCCGuCCaugcguuugcgaaGGCugGuGAUGGCa -3'
miRNA:   3'- guaAGGCGGCuGG-------------CUGugCuCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 17506 0.66 0.726094
Target:  5'- --cUCCGCgucaGACCGACgaggGCGAcgUGGCa -3'
miRNA:   3'- guaAGGCGg---CUGGCUG----UGCUcuGCCG- -5'
12462 3' -56.1 NC_003324.1 + 17613 0.73 0.346894
Target:  5'- gGUUCCGaUCG-CCGACGCGGGAacugcagGGCa -3'
miRNA:   3'- gUAAGGC-GGCuGGCUGUGCUCUg------CCG- -5'
12462 3' -56.1 NC_003324.1 + 17860 0.68 0.607761
Target:  5'- ---aUCGCCGgcaucACCGGCAUGAuggcccuGAUGGCg -3'
miRNA:   3'- guaaGGCGGC-----UGGCUGUGCU-------CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 18156 0.68 0.587401
Target:  5'- uGUUCCaCCGcGCCGAgguguggaacCGCGAaguGACGGCa -3'
miRNA:   3'- gUAAGGcGGC-UGGCU----------GUGCU---CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 19844 0.66 0.715674
Target:  5'- ---gCCGCCGGggGACGCGAacaGAcCGGCc -3'
miRNA:   3'- guaaGGCGGCUggCUGUGCU---CU-GCCG- -5'
12462 3' -56.1 NC_003324.1 + 20493 0.66 0.694607
Target:  5'- ---aCCGCuugCGAUCGACGau-GACGGCu -3'
miRNA:   3'- guaaGGCG---GCUGGCUGUgcuCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 20780 0.68 0.56505
Target:  5'- ---cCCGUgGuCCGGCGCaacggagcucgaaGAGACGGCu -3'
miRNA:   3'- guaaGGCGgCuGGCUGUG-------------CUCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 20785 0.71 0.444425
Target:  5'- ---aCCGCCGgaaCGuugGCGAGGCGGCg -3'
miRNA:   3'- guaaGGCGGCug-GCug-UGCUCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 20831 0.68 0.608835
Target:  5'- ----gCGCaUGGCCGACAuCGAGAagcaGGCg -3'
miRNA:   3'- guaagGCG-GCUGGCUGU-GCUCUg---CCG- -5'
12462 3' -56.1 NC_003324.1 + 21594 0.66 0.714627
Target:  5'- cCGUggCgGCCGuCCGACcuugagcaacgcgACGGGcGCGGCa -3'
miRNA:   3'- -GUAa-GgCGGCuGGCUG-------------UGCUC-UGCCG- -5'
12462 3' -56.1 NC_003324.1 + 22031 0.69 0.534574
Target:  5'- --aUCgCGCCG-CCGA--CGAGAUGGCc -3'
miRNA:   3'- guaAG-GCGGCuGGCUguGCUCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 23517 0.66 0.736425
Target:  5'- gGUUCCaaccCCGGCaCGAUcggugccccacaGCGuGGCGGCg -3'
miRNA:   3'- gUAAGGc---GGCUG-GCUG------------UGCuCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 23536 0.72 0.38054
Target:  5'- --aUCU-CCGACCG-CACGAgcGACGGCa -3'
miRNA:   3'- guaAGGcGGCUGGCuGUGCU--CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 23724 0.66 0.705174
Target:  5'- --gUCCGCCGGCUG-CACGucACGa- -3'
miRNA:   3'- guaAGGCGGCUGGCuGUGCucUGCcg -5'
12462 3' -56.1 NC_003324.1 + 23924 0.66 0.726094
Target:  5'- ----gCGCCGACaUGGCGuCGAGguucacGCGGCg -3'
miRNA:   3'- guaagGCGGCUG-GCUGU-GCUC------UGCCG- -5'
12462 3' -56.1 NC_003324.1 + 24358 0.68 0.619585
Target:  5'- --cUCCGCCGugCccaGAUcgACGAGAaGGCc -3'
miRNA:   3'- guaAGGCGGCugG---CUG--UGCUCUgCCG- -5'
12462 3' -56.1 NC_003324.1 + 24442 0.68 0.619585
Target:  5'- aCAUUgCGCCGACCuGCACGuccuGGACa-- -3'
miRNA:   3'- -GUAAgGCGGCUGGcUGUGC----UCUGccg -5'
12462 3' -56.1 NC_003324.1 + 25606 0.66 0.694607
Target:  5'- --gUCUGUCGGCCGcugcuGCGCcGGcACGGCu -3'
miRNA:   3'- guaAGGCGGCUGGC-----UGUGcUC-UGCCG- -5'
12462 3' -56.1 NC_003324.1 + 25652 0.66 0.715674
Target:  5'- ---aCCGCCGAggacaaucUCGGCGa-AGGCGGCc -3'
miRNA:   3'- guaaGGCGGCU--------GGCUGUgcUCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.