miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12462 3' -56.1 NC_003324.1 + 41721 0.66 0.702011
Target:  5'- ---gCCGCCGacgagagcgggcgaGCCGugGCaauGGugGGCg -3'
miRNA:   3'- guaaGGCGGC--------------UGGCugUGc--UCugCCG- -5'
12462 3' -56.1 NC_003324.1 + 40345 0.71 0.444425
Target:  5'- ---cCCGCCaagccccgGACCGcACGCaAGGCGGCa -3'
miRNA:   3'- guaaGGCGG--------CUGGC-UGUGcUCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 40144 0.67 0.673309
Target:  5'- gCGUUCCgGCCaGACCcGCGCaacuacgguGGACGGCc -3'
miRNA:   3'- -GUAAGG-CGG-CUGGcUGUGc--------UCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 39987 0.72 0.363447
Target:  5'- uCcgUCgCGCCGAgCGugGCGAGGguguUGGCg -3'
miRNA:   3'- -GuaAG-GCGGCUgGCugUGCUCU----GCCG- -5'
12462 3' -56.1 NC_003324.1 + 38035 1.12 0.000625
Target:  5'- aCAUUCCGCCGACCGACACGAGACGGCg -3'
miRNA:   3'- -GUAAGGCGGCUGGCUGUGCUCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 34508 0.77 0.190303
Target:  5'- aAUgugCCGUCGGCCGACAucaccgaugcCGAGgACGGCg -3'
miRNA:   3'- gUAa--GGCGGCUGGCUGU----------GCUC-UGCCG- -5'
12462 3' -56.1 NC_003324.1 + 33462 0.67 0.650788
Target:  5'- --cUCCGCCaguGGCCGgaguugcGCGCGgAGcCGGCa -3'
miRNA:   3'- guaAGGCGG---CUGGC-------UGUGC-UCuGCCG- -5'
12462 3' -56.1 NC_003324.1 + 32746 0.68 0.56611
Target:  5'- ---cCCGCCGACCGGuUugGuGGCGGg -3'
miRNA:   3'- guaaGGCGGCUGGCU-GugCuCUGCCg -5'
12462 3' -56.1 NC_003324.1 + 31721 0.69 0.534574
Target:  5'- --cUCCGgCGcGCCGaaggaaguGCGCGAGugGGUg -3'
miRNA:   3'- guaAGGCgGC-UGGC--------UGUGCUCugCCG- -5'
12462 3' -56.1 NC_003324.1 + 31243 0.76 0.216785
Target:  5'- cCAgcgCCGCCGGCCGcacuGCGCGuuuuugcGGCGGCg -3'
miRNA:   3'- -GUaa-GGCGGCUGGC----UGUGCu------CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 31168 0.7 0.493554
Target:  5'- gCAUUgCCGCaagGACCGGCACG-GACaaucaGGCc -3'
miRNA:   3'- -GUAA-GGCGg--CUGGCUGUGCuCUG-----CCG- -5'
12462 3' -56.1 NC_003324.1 + 31021 0.66 0.704121
Target:  5'- ---aUCGCuugguagCGACCGGCGCG-GuCGGCg -3'
miRNA:   3'- guaaGGCG-------GCUGGCUGUGCuCuGCCG- -5'
12462 3' -56.1 NC_003324.1 + 30387 0.72 0.389285
Target:  5'- cCAUgCCGCCcucGACCagGAUACG-GACGGCu -3'
miRNA:   3'- -GUAaGGCGG---CUGG--CUGUGCuCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 30150 0.68 0.56611
Target:  5'- ---gCCGCagCGGCCGGuguCGCGAccGGCGGCg -3'
miRNA:   3'- guaaGGCG--GCUGGCU---GUGCU--CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 30060 0.66 0.715674
Target:  5'- uCAcgCCGCCGgucgcgacACCGGC-CGcuGCGGCu -3'
miRNA:   3'- -GUaaGGCGGC--------UGGCUGuGCucUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 29911 0.66 0.715674
Target:  5'- ---gCUGCUGGCC-AUGCuGGACGGCg -3'
miRNA:   3'- guaaGGCGGCUGGcUGUGcUCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 29760 0.7 0.483522
Target:  5'- ----gUGCCGAUCGGCaaugugACGaAGACGGCg -3'
miRNA:   3'- guaagGCGGCUGGCUG------UGC-UCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 29349 0.82 0.08885
Target:  5'- --aUCCGCCGAUCGAgCGCGAGccCGGCg -3'
miRNA:   3'- guaAGGCGGCUGGCU-GUGCUCu-GCCG- -5'
12462 3' -56.1 NC_003324.1 + 29329 0.68 0.619585
Target:  5'- uCAggCCGCUGACCGAgAgGuuuucGAcCGGCa -3'
miRNA:   3'- -GUaaGGCGGCUGGCUgUgCu----CU-GCCG- -5'
12462 3' -56.1 NC_003324.1 + 25652 0.66 0.715674
Target:  5'- ---aCCGCCGAggacaaucUCGGCGa-AGGCGGCc -3'
miRNA:   3'- guaaGGCGGCU--------GGCUGUgcUCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.