miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12462 3' -56.1 NC_003324.1 + 56291 0.68 0.608835
Target:  5'- ---gCCGCCGAUCGAgcgauagGCGAGGCuGCc -3'
miRNA:   3'- guaaGGCGGCUGGCUg------UGCUCUGcCG- -5'
12462 3' -56.1 NC_003324.1 + 55515 0.67 0.673309
Target:  5'- ---cCUGCCGGCCucGACACguucaugaagGAGAuCGGCc -3'
miRNA:   3'- guaaGGCGGCUGG--CUGUG----------CUCU-GCCG- -5'
12462 3' -56.1 NC_003324.1 + 55106 0.67 0.641108
Target:  5'- ---gCCGUCGGCauGCACGuGaACGGCa -3'
miRNA:   3'- guaaGGCGGCUGgcUGUGCuC-UGCCG- -5'
12462 3' -56.1 NC_003324.1 + 54808 0.67 0.651862
Target:  5'- ---aCCGCCGcGCCGuuCGCGgugAGAcCGGCa -3'
miRNA:   3'- guaaGGCGGC-UGGCu-GUGC---UCU-GCCG- -5'
12462 3' -56.1 NC_003324.1 + 54515 0.67 0.641108
Target:  5'- ---gCCGCCGGCUauGACccaguCGAGGCccGGCa -3'
miRNA:   3'- guaaGGCGGCUGG--CUGu----GCUCUG--CCG- -5'
12462 3' -56.1 NC_003324.1 + 54075 0.66 0.726094
Target:  5'- --aUCgGCCGACCGGCuCGAcauccaguuuguGACGaaGCg -3'
miRNA:   3'- guaAGgCGGCUGGCUGuGCU------------CUGC--CG- -5'
12462 3' -56.1 NC_003324.1 + 53664 0.67 0.641108
Target:  5'- uCAUgUCGCaaaggggGACCGGCAUcAGGCGGCc -3'
miRNA:   3'- -GUAaGGCGg------CUGGCUGUGcUCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 53654 0.71 0.415379
Target:  5'- ---aCCGCCGugCGGCACcuugGAGcgccgagcuugauACGGCg -3'
miRNA:   3'- guaaGGCGGCugGCUGUG----CUC-------------UGCCG- -5'
12462 3' -56.1 NC_003324.1 + 52679 0.71 0.444425
Target:  5'- uGUUCUGCCagauGCCGAgAUGAGcguCGGCg -3'
miRNA:   3'- gUAAGGCGGc---UGGCUgUGCUCu--GCCG- -5'
12462 3' -56.1 NC_003324.1 + 52286 0.69 0.534574
Target:  5'- -cUUCUaCCGcCCGAUuCGGGGCGGCc -3'
miRNA:   3'- guAAGGcGGCuGGCUGuGCUCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 52092 0.66 0.704121
Target:  5'- ---cCUGCCGuaaggacGCCGACgauuauuuugACGAGGuCGGCg -3'
miRNA:   3'- guaaGGCGGC-------UGGCUG----------UGCUCU-GCCG- -5'
12462 3' -56.1 NC_003324.1 + 49101 0.66 0.725056
Target:  5'- cUAUUUCGCUG-CCgguGACGCGAucgccaaGAUGGCg -3'
miRNA:   3'- -GUAAGGCGGCuGG---CUGUGCU-------CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 47811 0.7 0.467677
Target:  5'- ---cCCGCCGGaaggaagacgaauacCUGACGCcuuauGAGGCGGCg -3'
miRNA:   3'- guaaGGCGGCU---------------GGCUGUG-----CUCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 47602 0.66 0.736425
Target:  5'- aGUUCCGuCCGAgcuuuaccaCGcCGCGcauGACGGCg -3'
miRNA:   3'- gUAAGGC-GGCUg--------GCuGUGCu--CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 43930 0.7 0.503681
Target:  5'- aGUUCCGCUGcaucgggggcAUCGACaACGAuccGGCGGCc -3'
miRNA:   3'- gUAAGGCGGC----------UGGCUG-UGCU---CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 43173 0.66 0.726094
Target:  5'- ---cCCGCUGGCgGAUgGCGAGACGa- -3'
miRNA:   3'- guaaGGCGGCUGgCUG-UGCUCUGCcg -5'
12462 3' -56.1 NC_003324.1 + 42866 0.68 0.576734
Target:  5'- gAggCUGCCGGCCGGCccGCGAGGaucuGCg -3'
miRNA:   3'- gUaaGGCGGCUGGCUG--UGCUCUgc--CG- -5'
12462 3' -56.1 NC_003324.1 + 42388 0.73 0.338823
Target:  5'- ---aCCGgCGcCCGGCACGuggcAGGCGGCg -3'
miRNA:   3'- guaaGGCgGCuGGCUGUGC----UCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 42259 0.66 0.726094
Target:  5'- gGUUCuCGUugaGACCuacagGGCGCGGGuCGGCa -3'
miRNA:   3'- gUAAG-GCGg--CUGG-----CUGUGCUCuGCCG- -5'
12462 3' -56.1 NC_003324.1 + 41853 0.67 0.662599
Target:  5'- aCAUUcCCGCCGAgcucgUCGACAuCGAGcaaAUGGUu -3'
miRNA:   3'- -GUAA-GGCGGCU-----GGCUGU-GCUC---UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.