miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12470 3' -59.2 NC_003324.1 + 52654 0.66 0.529871
Target:  5'- gUCGGCGAUGUUGAcgGUGauagGCUGUCUcauGCu -3'
miRNA:   3'- -AGCCGUUGCGACU--CACg---CGGCGGA---CG- -5'
12470 3' -59.2 NC_003324.1 + 57364 0.66 0.526766
Target:  5'- gCGGCAcgaccgGCGUUGAGcaucugaGCgcaauagcaggcugGCCGCUUGCg -3'
miRNA:   3'- aGCCGU------UGCGACUCa------CG--------------CGGCGGACG- -5'
12470 3' -59.2 NC_003324.1 + 24096 0.66 0.526766
Target:  5'- aCGGUGGCGCUGAuacccuugucGUaguucugcuccagcGCGCUGaUCUGCg -3'
miRNA:   3'- aGCCGUUGCGACU----------CA--------------CGCGGC-GGACG- -5'
12470 3' -59.2 NC_003324.1 + 43006 0.66 0.51955
Target:  5'- gUCGGCAACGgaGAaccgGCCgguagugggGCCUGCa -3'
miRNA:   3'- -AGCCGUUGCgaCUcacgCGG---------CGGACG- -5'
12470 3' -59.2 NC_003324.1 + 22685 0.66 0.51955
Target:  5'- cUCGGCAACGCgGcAG-GCagccaaaagGCCGCCg-- -3'
miRNA:   3'- -AGCCGUUGCGaC-UCaCG---------CGGCGGacg -5'
12470 3' -59.2 NC_003324.1 + 49837 0.66 0.516468
Target:  5'- aCuGCAGCGUuccacgugaUGguGGUGCGCCcgcugaaccaucccGCCUGCa -3'
miRNA:   3'- aGcCGUUGCG---------AC--UCACGCGG--------------CGGACG- -5'
12470 3' -59.2 NC_003324.1 + 27187 0.66 0.509308
Target:  5'- aUCGGgAACGC-GGGUaaGCGCCuucUCUGCc -3'
miRNA:   3'- -AGCCgUUGCGaCUCA--CGCGGc--GGACG- -5'
12470 3' -59.2 NC_003324.1 + 31102 0.66 0.506252
Target:  5'- gCGGCAauGCGCUGcugcucGGcugcugcuuguucuUGCGCCuggcgcugcagGCCUGCc -3'
miRNA:   3'- aGCCGU--UGCGAC------UC--------------ACGCGG-----------CGGACG- -5'
12470 3' -59.2 NC_003324.1 + 33680 0.66 0.499153
Target:  5'- gUCGGCAACGCgc--UGCGCaaaGCa-GCa -3'
miRNA:   3'- -AGCCGUUGCGacucACGCGg--CGgaCG- -5'
12470 3' -59.2 NC_003324.1 + 32773 0.66 0.483095
Target:  5'- aCGGCAgugucguuccGCGCaUGAGUGCGgucucuggauggagcCCGCacgcaUGCc -3'
miRNA:   3'- aGCCGU----------UGCG-ACUCACGC---------------GGCGg----ACG- -5'
12470 3' -59.2 NC_003324.1 + 2797 0.67 0.469252
Target:  5'- aUCGGCuauCGCUugGAGacUGcCGCCGCCg-- -3'
miRNA:   3'- -AGCCGuu-GCGA--CUC--AC-GCGGCGGacg -5'
12470 3' -59.2 NC_003324.1 + 49724 0.67 0.469252
Target:  5'- aUCGGCAGCGUcGucgaAGuUGCGaucguuggCGCCUGCc -3'
miRNA:   3'- -AGCCGUUGCGaC----UC-ACGCg-------GCGGACG- -5'
12470 3' -59.2 NC_003324.1 + 27949 0.67 0.469252
Target:  5'- cCGGCuACGCcagcGAGgacgaagcgcGCGCCGCCUa- -3'
miRNA:   3'- aGCCGuUGCGa---CUCa---------CGCGGCGGAcg -5'
12470 3' -59.2 NC_003324.1 + 48755 0.67 0.459489
Target:  5'- -aGGUGAUGCcGAGaUGCGCaGCCaGCg -3'
miRNA:   3'- agCCGUUGCGaCUC-ACGCGgCGGaCG- -5'
12470 3' -59.2 NC_003324.1 + 38293 0.67 0.456581
Target:  5'- uUCGGCAACuacguguucgacgaGgaGaAGUGCGCCcaaggcauCCUGCa -3'
miRNA:   3'- -AGCCGUUG--------------CgaC-UCACGCGGc-------GGACG- -5'
12470 3' -59.2 NC_003324.1 + 22202 0.67 0.449835
Target:  5'- aCGGUGAUGUUG-GUGggcuUGCCGCC-GCg -3'
miRNA:   3'- aGCCGUUGCGACuCAC----GCGGCGGaCG- -5'
12470 3' -59.2 NC_003324.1 + 53689 0.67 0.449835
Target:  5'- aCGGCGaaacagGCGCUGGacgcaUGCGaCGCCUGg -3'
miRNA:   3'- aGCCGU------UGCGACUc----ACGCgGCGGACg -5'
12470 3' -59.2 NC_003324.1 + 20893 0.67 0.434625
Target:  5'- aCGGCGAUGCgcgucaccaacacGGUcCGCCGCCUcGCc -3'
miRNA:   3'- aGCCGUUGCGac-----------UCAcGCGGCGGA-CG- -5'
12470 3' -59.2 NC_003324.1 + 24333 0.67 0.43087
Target:  5'- cCGGCAACGCgguccuucGAcGUGUcauucgggaacGCCacaGCCUGCg -3'
miRNA:   3'- aGCCGUUGCGa-------CU-CACG-----------CGG---CGGACG- -5'
12470 3' -59.2 NC_003324.1 + 9651 0.67 0.43087
Target:  5'- cCGGCAacgccaacGCGCUGGGcgGCGUgggGCCggGCg -3'
miRNA:   3'- aGCCGU--------UGCGACUCa-CGCGg--CGGa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.