miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12470 3' -59.2 NC_003324.1 + 42287 1.1 0.00032
Target:  5'- gUCGGCAACGCUGAGUGCGCCGCCUGCc -3'
miRNA:   3'- -AGCCGUUGCGACUCACGCGGCGGACG- -5'
12470 3' -59.2 NC_003324.1 + 9651 0.67 0.43087
Target:  5'- cCGGCAacgccaacGCGCUGGGcgGCGUgggGCCggGCg -3'
miRNA:   3'- aGCCGU--------UGCGACUCa-CGCGg--CGGa-CG- -5'
12470 3' -59.2 NC_003324.1 + 24333 0.67 0.43087
Target:  5'- cCGGCAACGCgguccuucGAcGUGUcauucgggaacGCCacaGCCUGCg -3'
miRNA:   3'- aGCCGUUGCGa-------CU-CACG-----------CGG---CGGACG- -5'
12470 3' -59.2 NC_003324.1 + 53689 0.67 0.449835
Target:  5'- aCGGCGaaacagGCGCUGGacgcaUGCGaCGCCUGg -3'
miRNA:   3'- aGCCGU------UGCGACUc----ACGCgGCGGACg -5'
12470 3' -59.2 NC_003324.1 + 22202 0.67 0.449835
Target:  5'- aCGGUGAUGUUG-GUGggcuUGCCGCC-GCg -3'
miRNA:   3'- aGCCGUUGCGACuCAC----GCGGCGGaCG- -5'
12470 3' -59.2 NC_003324.1 + 31102 0.66 0.506252
Target:  5'- gCGGCAauGCGCUGcugcucGGcugcugcuuguucuUGCGCCuggcgcugcagGCCUGCc -3'
miRNA:   3'- aGCCGU--UGCGAC------UC--------------ACGCGG-----------CGGACG- -5'
12470 3' -59.2 NC_003324.1 + 27187 0.66 0.509308
Target:  5'- aUCGGgAACGC-GGGUaaGCGCCuucUCUGCc -3'
miRNA:   3'- -AGCCgUUGCGaCUCA--CGCGGc--GGACG- -5'
12470 3' -59.2 NC_003324.1 + 43006 0.66 0.51955
Target:  5'- gUCGGCAACGgaGAaccgGCCgguagugggGCCUGCa -3'
miRNA:   3'- -AGCCGUUGCgaCUcacgCGG---------CGGACG- -5'
12470 3' -59.2 NC_003324.1 + 24096 0.66 0.526766
Target:  5'- aCGGUGGCGCUGAuacccuugucGUaguucugcuccagcGCGCUGaUCUGCg -3'
miRNA:   3'- aGCCGUUGCGACU----------CA--------------CGCGGC-GGACG- -5'
12470 3' -59.2 NC_003324.1 + 5445 0.67 0.421564
Target:  5'- cUCcGCAucgACGCUGGGUcaggcaggcgGCGUCGCCcGCc -3'
miRNA:   3'- -AGcCGU---UGCGACUCA----------CGCGGCGGaCG- -5'
12470 3' -59.2 NC_003324.1 + 54269 0.68 0.404222
Target:  5'- cCGGCAucagcgccgagccguUGCUGgaAGgccugcgucUGCGCCGUCUGCa -3'
miRNA:   3'- aGCCGUu--------------GCGAC--UC---------ACGCGGCGGACG- -5'
12470 3' -59.2 NC_003324.1 + 26826 0.74 0.152422
Target:  5'- uUUGGCGccgcucCGCUGAGUGCcucgucgaucGCCGCCaUGCc -3'
miRNA:   3'- -AGCCGUu-----GCGACUCACG----------CGGCGG-ACG- -5'
12470 3' -59.2 NC_003324.1 + 16882 0.74 0.152422
Target:  5'- gCGGCAAcuauCGUUGAuGUGCGCCGaUUUGCa -3'
miRNA:   3'- aGCCGUU----GCGACU-CACGCGGC-GGACG- -5'
12470 3' -59.2 NC_003324.1 + 38358 0.74 0.160808
Target:  5'- -gGGCGGCGCUG-GU-CGCCGUCgUGCg -3'
miRNA:   3'- agCCGUUGCGACuCAcGCGGCGG-ACG- -5'
12470 3' -59.2 NC_003324.1 + 24431 0.73 0.174168
Target:  5'- -gGGCGAUGCgaacauUGCGCCGaCCUGCa -3'
miRNA:   3'- agCCGUUGCGacuc--ACGCGGC-GGACG- -5'
12470 3' -59.2 NC_003324.1 + 53923 0.73 0.198637
Target:  5'- gCGGCAaguGCGCUu----CGCCGCCUGCa -3'
miRNA:   3'- aGCCGU---UGCGAcucacGCGGCGGACG- -5'
12470 3' -59.2 NC_003324.1 + 16721 0.7 0.275823
Target:  5'- gUCGauGCAGCGCUGGGcaaucUGCccggcgaguucauGCCGCuCUGCa -3'
miRNA:   3'- -AGC--CGUUGCGACUC-----ACG-------------CGGCG-GACG- -5'
12470 3' -59.2 NC_003324.1 + 21066 0.7 0.297627
Target:  5'- cCGGCaAACGCUGccuUGUcgGCCGCCgcgGCg -3'
miRNA:   3'- aGCCG-UUGCGACuc-ACG--CGGCGGa--CG- -5'
12470 3' -59.2 NC_003324.1 + 50018 0.69 0.343564
Target:  5'- aUCGGCAaGCGCUGGG---GCCGCUgaucgGCu -3'
miRNA:   3'- -AGCCGU-UGCGACUCacgCGGCGGa----CG- -5'
12470 3' -59.2 NC_003324.1 + 16996 0.72 0.226048
Target:  5'- aUCGGUGACGCUGGca--GCCGCCaccuUGCa -3'
miRNA:   3'- -AGCCGUUGCGACUcacgCGGCGG----ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.