miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12470 3' -59.2 NC_003324.1 + 42287 1.1 0.00032
Target:  5'- gUCGGCAACGCUGAGUGCGCCGCCUGCc -3'
miRNA:   3'- -AGCCGUUGCGACUCACGCGGCGGACG- -5'
12470 3' -59.2 NC_003324.1 + 26826 0.74 0.152422
Target:  5'- uUUGGCGccgcucCGCUGAGUGCcucgucgaucGCCGCCaUGCc -3'
miRNA:   3'- -AGCCGUu-----GCGACUCACG----------CGGCGG-ACG- -5'
12470 3' -59.2 NC_003324.1 + 16882 0.74 0.152422
Target:  5'- gCGGCAAcuauCGUUGAuGUGCGCCGaUUUGCa -3'
miRNA:   3'- aGCCGUU----GCGACU-CACGCGGC-GGACG- -5'
12470 3' -59.2 NC_003324.1 + 38358 0.74 0.160808
Target:  5'- -gGGCGGCGCUG-GU-CGCCGUCgUGCg -3'
miRNA:   3'- agCCGUUGCGACuCAcGCGGCGG-ACG- -5'
12470 3' -59.2 NC_003324.1 + 24431 0.73 0.174168
Target:  5'- -gGGCGAUGCgaacauUGCGCCGaCCUGCa -3'
miRNA:   3'- agCCGUUGCGacuc--ACGCGGC-GGACG- -5'
12470 3' -59.2 NC_003324.1 + 53923 0.73 0.198637
Target:  5'- gCGGCAaguGCGCUu----CGCCGCCUGCa -3'
miRNA:   3'- aGCCGU---UGCGAcucacGCGGCGGACG- -5'
12470 3' -59.2 NC_003324.1 + 16996 0.72 0.226048
Target:  5'- aUCGGUGACGCUGGca--GCCGCCaccuUGCa -3'
miRNA:   3'- -AGCCGUUGCGACUcacgCGGCGG----ACG- -5'
12470 3' -59.2 NC_003324.1 + 10693 0.71 0.24031
Target:  5'- aCGGcCAGCGUUGGGcgacugggggacgguUGcCGuuGCCUGCa -3'
miRNA:   3'- aGCC-GUUGCGACUC---------------AC-GCggCGGACG- -5'
12470 3' -59.2 NC_003324.1 + 45443 0.71 0.2566
Target:  5'- -gGGCcuCGCUGcu--CGCCGCCUGCu -3'
miRNA:   3'- agCCGuuGCGACucacGCGGCGGACG- -5'
12470 3' -59.2 NC_003324.1 + 16721 0.7 0.275823
Target:  5'- gUCGauGCAGCGCUGGGcaaucUGCccggcgaguucauGCCGCuCUGCa -3'
miRNA:   3'- -AGC--CGUUGCGACUC-----ACG-------------CGGCG-GACG- -5'
12470 3' -59.2 NC_003324.1 + 21066 0.7 0.297627
Target:  5'- cCGGCaAACGCUGccuUGUcgGCCGCCgcgGCg -3'
miRNA:   3'- aGCCG-UUGCGACuc-ACG--CGGCGGa--CG- -5'
12470 3' -59.2 NC_003324.1 + 38104 0.7 0.297627
Target:  5'- gUCGGCGgaAUGUUGAcgcgccccGUGCGCCGCaaccGCu -3'
miRNA:   3'- -AGCCGU--UGCGACU--------CACGCGGCGga--CG- -5'
12470 3' -59.2 NC_003324.1 + 50018 0.69 0.343564
Target:  5'- aUCGGCAaGCGCUGGG---GCCGCUgaucgGCu -3'
miRNA:   3'- -AGCCGU-UGCGACUCacgCGGCGGa----CG- -5'
12470 3' -59.2 NC_003324.1 + 22317 0.69 0.35997
Target:  5'- aUCGGCAagACGUUGccgcucccgaaGGUGCGCgGCg-GCa -3'
miRNA:   3'- -AGCCGU--UGCGAC-----------UCACGCGgCGgaCG- -5'
12470 3' -59.2 NC_003324.1 + 3755 0.69 0.35997
Target:  5'- aUGGC-ACGCU-AGUuCGCgGCCUGCc -3'
miRNA:   3'- aGCCGuUGCGAcUCAcGCGgCGGACG- -5'
12470 3' -59.2 NC_003324.1 + 17976 0.68 0.368376
Target:  5'- -aGGUcGCGCUG-GUGUuCCGCCaGCa -3'
miRNA:   3'- agCCGuUGCGACuCACGcGGCGGaCG- -5'
12470 3' -59.2 NC_003324.1 + 57308 0.68 0.368376
Target:  5'- cUUGGCGAaGUUcuuGUGCGCCaGCUUGCa -3'
miRNA:   3'- -AGCCGUUgCGAcu-CACGCGG-CGGACG- -5'
12470 3' -59.2 NC_003324.1 + 48703 0.68 0.368376
Target:  5'- gCGGCGGaGCcgGAugcggGCGCCGaCCUGCg -3'
miRNA:   3'- aGCCGUUgCGa-CUca---CGCGGC-GGACG- -5'
12470 3' -59.2 NC_003324.1 + 31312 0.68 0.376916
Target:  5'- cCGGCGGCGCUG---GCGCUGgCggggGCa -3'
miRNA:   3'- aGCCGUUGCGACucaCGCGGCgGa---CG- -5'
12470 3' -59.2 NC_003324.1 + 50622 0.68 0.385587
Target:  5'- cUCGGCGucgagcaggucaACGC-GGGUGCugGCUGCgUGCc -3'
miRNA:   3'- -AGCCGU------------UGCGaCUCACG--CGGCGgACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.