miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12470 3' -59.2 NC_003324.1 + 27949 0.67 0.469252
Target:  5'- cCGGCuACGCcagcGAGgacgaagcgcGCGCCGCCUa- -3'
miRNA:   3'- aGCCGuUGCGa---CUCa---------CGCGGCGGAcg -5'
12470 3' -59.2 NC_003324.1 + 30452 0.67 0.421564
Target:  5'- gCGGCAugGCcGAGgGCGaCGCCaucaagGCu -3'
miRNA:   3'- aGCCGUugCGaCUCaCGCgGCGGa-----CG- -5'
12470 3' -59.2 NC_003324.1 + 31102 0.66 0.506252
Target:  5'- gCGGCAauGCGCUGcugcucGGcugcugcuuguucuUGCGCCuggcgcugcagGCCUGCc -3'
miRNA:   3'- aGCCGU--UGCGAC------UC--------------ACGCGG-----------CGGACG- -5'
12470 3' -59.2 NC_003324.1 + 31312 0.68 0.376916
Target:  5'- cCGGCGGCGCUG---GCGCUGgCggggGCa -3'
miRNA:   3'- aGCCGUUGCGACucaCGCGGCgGa---CG- -5'
12470 3' -59.2 NC_003324.1 + 32773 0.66 0.483095
Target:  5'- aCGGCAgugucguuccGCGCaUGAGUGCGgucucuggauggagcCCGCacgcaUGCc -3'
miRNA:   3'- aGCCGU----------UGCG-ACUCACGC---------------GGCGg----ACG- -5'
12470 3' -59.2 NC_003324.1 + 33680 0.66 0.499153
Target:  5'- gUCGGCAACGCgc--UGCGCaaaGCa-GCa -3'
miRNA:   3'- -AGCCGUUGCGacucACGCGg--CGgaCG- -5'
12470 3' -59.2 NC_003324.1 + 38104 0.7 0.297627
Target:  5'- gUCGGCGgaAUGUUGAcgcgccccGUGCGCCGCaaccGCu -3'
miRNA:   3'- -AGCCGU--UGCGACU--------CACGCGGCGga--CG- -5'
12470 3' -59.2 NC_003324.1 + 38293 0.67 0.456581
Target:  5'- uUCGGCAACuacguguucgacgaGgaGaAGUGCGCCcaaggcauCCUGCa -3'
miRNA:   3'- -AGCCGUUG--------------CgaC-UCACGCGGc-------GGACG- -5'
12470 3' -59.2 NC_003324.1 + 38358 0.74 0.160808
Target:  5'- -gGGCGGCGCUG-GU-CGCCGUCgUGCg -3'
miRNA:   3'- agCCGUUGCGACuCAcGCGGCGG-ACG- -5'
12470 3' -59.2 NC_003324.1 + 42287 1.1 0.00032
Target:  5'- gUCGGCAACGCUGAGUGCGCCGCCUGCc -3'
miRNA:   3'- -AGCCGUUGCGACUCACGCGGCGGACG- -5'
12470 3' -59.2 NC_003324.1 + 43006 0.66 0.51955
Target:  5'- gUCGGCAACGgaGAaccgGCCgguagugggGCCUGCa -3'
miRNA:   3'- -AGCCGUUGCgaCUcacgCGG---------CGGACG- -5'
12470 3' -59.2 NC_003324.1 + 45443 0.71 0.2566
Target:  5'- -gGGCcuCGCUGcu--CGCCGCCUGCu -3'
miRNA:   3'- agCCGuuGCGACucacGCGGCGGACG- -5'
12470 3' -59.2 NC_003324.1 + 48703 0.68 0.368376
Target:  5'- gCGGCGGaGCcgGAugcggGCGCCGaCCUGCg -3'
miRNA:   3'- aGCCGUUgCGa-CUca---CGCGGC-GGACG- -5'
12470 3' -59.2 NC_003324.1 + 48755 0.67 0.459489
Target:  5'- -aGGUGAUGCcGAGaUGCGCaGCCaGCg -3'
miRNA:   3'- agCCGUUGCGaCUC-ACGCGgCGGaCG- -5'
12470 3' -59.2 NC_003324.1 + 49724 0.67 0.469252
Target:  5'- aUCGGCAGCGUcGucgaAGuUGCGaucguuggCGCCUGCc -3'
miRNA:   3'- -AGCCGUUGCGaC----UC-ACGCg-------GCGGACG- -5'
12470 3' -59.2 NC_003324.1 + 49837 0.66 0.516468
Target:  5'- aCuGCAGCGUuccacgugaUGguGGUGCGCCcgcugaaccaucccGCCUGCa -3'
miRNA:   3'- aGcCGUUGCG---------AC--UCACGCGG--------------CGGACG- -5'
12470 3' -59.2 NC_003324.1 + 50018 0.69 0.343564
Target:  5'- aUCGGCAaGCGCUGGG---GCCGCUgaucgGCu -3'
miRNA:   3'- -AGCCGU-UGCGACUCacgCGGCGGa----CG- -5'
12470 3' -59.2 NC_003324.1 + 50622 0.68 0.385587
Target:  5'- cUCGGCGucgagcaggucaACGC-GGGUGCugGCUGCgUGCc -3'
miRNA:   3'- -AGCCGU------------UGCGaCUCACG--CGGCGgACG- -5'
12470 3' -59.2 NC_003324.1 + 52654 0.66 0.529871
Target:  5'- gUCGGCGAUGUUGAcgGUGauagGCUGUCUcauGCu -3'
miRNA:   3'- -AGCCGUUGCGACU--CACg---CGGCGGA---CG- -5'
12470 3' -59.2 NC_003324.1 + 53689 0.67 0.449835
Target:  5'- aCGGCGaaacagGCGCUGGacgcaUGCGaCGCCUGg -3'
miRNA:   3'- aGCCGU------UGCGACUc----ACGCgGCGGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.