miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12479 3' -58.2 NC_003324.1 + 35107 0.66 0.593124
Target:  5'- -uCUGCCUuucCGUCGucGccAGCGCCGuCGCc -3'
miRNA:   3'- guGGCGGA---GUAGCuuC--UCGCGGC-GCG- -5'
12479 3' -58.2 NC_003324.1 + 21144 0.66 0.593124
Target:  5'- -uCgGCCUCGUCaguGAGCGagcgggCGCGCg -3'
miRNA:   3'- guGgCGGAGUAGcuuCUCGCg-----GCGCG- -5'
12479 3' -58.2 NC_003324.1 + 20688 0.66 0.58246
Target:  5'- aGCCGUCUCuUCGAGcucCGuuGCGCc -3'
miRNA:   3'- gUGGCGGAGuAGCUUcucGCggCGCG- -5'
12479 3' -58.2 NC_003324.1 + 282 0.66 0.58246
Target:  5'- uGCUGCUgugaccacUCAcaGGAGAGCGCUaugGCGCg -3'
miRNA:   3'- gUGGCGG--------AGUagCUUCUCGCGG---CGCG- -5'
12479 3' -58.2 NC_003324.1 + 6255 0.66 0.571834
Target:  5'- gGCUGCCUCucgcauGUCGucGGGCagcgcauuccagGCgGCGCg -3'
miRNA:   3'- gUGGCGGAG------UAGCuuCUCG------------CGgCGCG- -5'
12479 3' -58.2 NC_003324.1 + 42729 0.66 0.571834
Target:  5'- aAUgGCCUUgcuGUUGcAGAuccgcgcccgGCGCCGCGCg -3'
miRNA:   3'- gUGgCGGAG---UAGCuUCU----------CGCGGCGCG- -5'
12479 3' -58.2 NC_003324.1 + 31008 0.66 0.571834
Target:  5'- -uUCGCuCUCGUCGAucgcuuGGuAGCGaCCgGCGCg -3'
miRNA:   3'- guGGCG-GAGUAGCU------UC-UCGC-GG-CGCG- -5'
12479 3' -58.2 NC_003324.1 + 18489 0.66 0.571834
Target:  5'- cUugCGagCUCGUUGgcGAGCGUCacgGCGCg -3'
miRNA:   3'- -GugGCg-GAGUAGCuuCUCGCGG---CGCG- -5'
12479 3' -58.2 NC_003324.1 + 34144 0.66 0.571834
Target:  5'- aGCCGCUggCAUU---GGGCGCCGUGg -3'
miRNA:   3'- gUGGCGGa-GUAGcuuCUCGCGGCGCg -5'
12479 3' -58.2 NC_003324.1 + 55985 0.66 0.570773
Target:  5'- aCugCGCgcgaUCGUCGAgaagcgcacccacAGGGCGgaGCGCg -3'
miRNA:   3'- -GugGCGg---AGUAGCU-------------UCUCGCggCGCG- -5'
12479 3' -58.2 NC_003324.1 + 39875 0.66 0.570773
Target:  5'- gAUCGUCgUCAUCGAGG-GCGaggugcaCCGUGCc -3'
miRNA:   3'- gUGGCGG-AGUAGCUUCuCGC-------GGCGCG- -5'
12479 3' -58.2 NC_003324.1 + 20783 0.66 0.561255
Target:  5'- cCACCGCCggaaCGUUGgcGAG-GCgGCGg -3'
miRNA:   3'- -GUGGCGGa---GUAGCuuCUCgCGgCGCg -5'
12479 3' -58.2 NC_003324.1 + 29308 0.66 0.561255
Target:  5'- aGCCGCCgUC-UUGguGAGCGCaccguaGUGCu -3'
miRNA:   3'- gUGGCGG-AGuAGCuuCUCGCGg-----CGCG- -5'
12479 3' -58.2 NC_003324.1 + 40600 0.66 0.561255
Target:  5'- uCGCCGCgCUCgAUCGuggcuccaucGGGCGUgGUGCg -3'
miRNA:   3'- -GUGGCG-GAG-UAGCuu--------CUCGCGgCGCG- -5'
12479 3' -58.2 NC_003324.1 + 36840 0.66 0.55073
Target:  5'- cUAUCGcCCUCGUCGA----UGCUGCGCu -3'
miRNA:   3'- -GUGGC-GGAGUAGCUucucGCGGCGCG- -5'
12479 3' -58.2 NC_003324.1 + 35858 0.66 0.55073
Target:  5'- cCugCGCCUgG-CGAAcAGUGgCGCGCc -3'
miRNA:   3'- -GugGCGGAgUaGCUUcUCGCgGCGCG- -5'
12479 3' -58.2 NC_003324.1 + 47837 0.66 0.55073
Target:  5'- --aCGCCUUAU-GAGGcGGCGCUGcCGCu -3'
miRNA:   3'- gugGCGGAGUAgCUUC-UCGCGGC-GCG- -5'
12479 3' -58.2 NC_003324.1 + 17264 0.67 0.540266
Target:  5'- aGCCGCgUC--CGAcAGAcGCGCCaGCGCc -3'
miRNA:   3'- gUGGCGgAGuaGCU-UCU-CGCGG-CGCG- -5'
12479 3' -58.2 NC_003324.1 + 17030 0.67 0.540266
Target:  5'- -cCCGCgUC-UUGAucGAGCGCUGCaGCg -3'
miRNA:   3'- guGGCGgAGuAGCUu-CUCGCGGCG-CG- -5'
12479 3' -58.2 NC_003324.1 + 33427 0.67 0.540266
Target:  5'- aGCCGCUUCAUCGgcGuuGU-CCGUGUa -3'
miRNA:   3'- gUGGCGGAGUAGCuuCu-CGcGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.