miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12488 3' -55.1 NC_003324.1 + 36647 0.66 0.756493
Target:  5'- uUCCccggcgaaggUGCCGCCGGAGAUg---CGAGa -3'
miRNA:   3'- cAGG----------ACGGCGGCUUCUGuugaGCUCg -5'
12488 3' -55.1 NC_003324.1 + 49208 0.66 0.755464
Target:  5'- uUCCUGCCGacgauCCGAAcgccuGCGACgccaugaUCGGGCa -3'
miRNA:   3'- cAGGACGGC-----GGCUUc----UGUUG-------AGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 50362 0.66 0.750303
Target:  5'- uUCUUGCCGUCGAccGGCGGCgcaucauucucuuucUCGAcGCg -3'
miRNA:   3'- cAGGACGGCGGCUu-CUGUUG---------------AGCU-CG- -5'
12488 3' -55.1 NC_003324.1 + 48965 0.66 0.746152
Target:  5'- aGUCCuggaUGCgGgCGAAGGCGcgaUUGAGCg -3'
miRNA:   3'- -CAGG----ACGgCgGCUUCUGUug-AGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 43216 0.66 0.735697
Target:  5'- -gCUcGCCGUCGAGGACGGCaaccugCGGGa -3'
miRNA:   3'- caGGaCGGCGGCUUCUGUUGa-----GCUCg -5'
12488 3' -55.1 NC_003324.1 + 22950 0.66 0.735697
Target:  5'- cGUCCaGUCuCCGguGGCGAUgCGAGCg -3'
miRNA:   3'- -CAGGaCGGcGGCuuCUGUUGaGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 10937 0.66 0.735697
Target:  5'- -gCCaacaCCGCCGggGugAAggcUUCGGGCa -3'
miRNA:   3'- caGGac--GGCGGCuuCugUU---GAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 6513 0.66 0.725137
Target:  5'- cGUCUcgGCCGCUGAGccacGGCAGgguCUgCGAGCu -3'
miRNA:   3'- -CAGGa-CGGCGGCUU----CUGUU---GA-GCUCG- -5'
12488 3' -55.1 NC_003324.1 + 13791 0.66 0.725137
Target:  5'- -gCCUGCCGCCGuccGACGcgacACUUacccAGCa -3'
miRNA:   3'- caGGACGGCGGCuu-CUGU----UGAGc---UCG- -5'
12488 3' -55.1 NC_003324.1 + 51727 0.66 0.725137
Target:  5'- -gCCgacGCaauCGCCGAGGGCGccaagcaguAUUCGAGCu -3'
miRNA:   3'- caGGa--CG---GCGGCUUCUGU---------UGAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 42308 0.66 0.725137
Target:  5'- -gCCUGCCacgugccgggcGCCGguGACAgACUUaGAGCg -3'
miRNA:   3'- caGGACGG-----------CGGCuuCUGU-UGAG-CUCG- -5'
12488 3' -55.1 NC_003324.1 + 18960 0.66 0.714485
Target:  5'- cGUCCguggcgaaguaGCgGCCGAA-ACGAC-CGAGCg -3'
miRNA:   3'- -CAGGa----------CGgCGGCUUcUGUUGaGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 40410 0.66 0.703752
Target:  5'- cUgCUGCagCGCCGAAGgguGCAACUaagcaGGGCa -3'
miRNA:   3'- cAgGACG--GCGGCUUC---UGUUGAg----CUCG- -5'
12488 3' -55.1 NC_003324.1 + 26576 0.66 0.703752
Target:  5'- aUCCU--CGCCGAgaucGGACAacaucGCUUGGGCa -3'
miRNA:   3'- cAGGAcgGCGGCU----UCUGU-----UGAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 33498 0.67 0.692949
Target:  5'- ----cGCCGauGAAG-CGGCUCGGGCg -3'
miRNA:   3'- caggaCGGCggCUUCuGUUGAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 17629 0.67 0.692949
Target:  5'- ---aUGCCGCCGA-----GCUCGGGCc -3'
miRNA:   3'- caggACGGCGGCUucuguUGAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 40335 0.67 0.692949
Target:  5'- -cCCgGaCCGCaCGcAAGGCGGCagUCGAGCg -3'
miRNA:   3'- caGGaC-GGCG-GC-UUCUGUUG--AGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 15615 0.67 0.682088
Target:  5'- uUCCaUGUCGCCGuuggaAAGAUAggucugcuuaaGCUUGGGCa -3'
miRNA:   3'- cAGG-ACGGCGGC-----UUCUGU-----------UGAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 47411 0.67 0.682088
Target:  5'- -gCCUGCCaGgCGGAGcACAGCUuCGAcGCc -3'
miRNA:   3'- caGGACGG-CgGCUUC-UGUUGA-GCU-CG- -5'
12488 3' -55.1 NC_003324.1 + 33714 0.67 0.671179
Target:  5'- aUCCU-UCGgUGAcGAUGACUCGAGCg -3'
miRNA:   3'- cAGGAcGGCgGCUuCUGUUGAGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.