Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 12493 | 5' | -53.8 | NC_003324.1 | + | 30631 | 0.66 | 0.793369 |
|
Target: 5'- -cCGCUGGAguagagcaGCGCGucgCAGcGGCaGCGGc -3' miRNA: 3'- uaGCGACCU--------UGCGCua-GUU-CUG-CGCC- -5' |
|||||||
| 12493 | 5' | -53.8 | NC_003324.1 | + | 50926 | 0.66 | 0.793369 |
|
Target: 5'- uGUCGCUGGGcgaaccgccuGCaGCGAUguGGGCGUu- -3' miRNA: 3'- -UAGCGACCU----------UG-CGCUAguUCUGCGcc -5' |
|||||||
| 12493 | 5' | -53.8 | NC_003324.1 | + | 7767 | 0.66 | 0.803075 |
|
Target: 5'- cUCGCagGGAgGCGCGAUCGcaacGGGCuuugccgccGCGGc -3' miRNA: 3'- uAGCGa-CCU-UGCGCUAGU----UCUG---------CGCC- -5' |
|||||||
| 12493 | 5' | -53.8 | NC_003324.1 | + | 24881 | 0.66 | 0.8126 |
|
Target: 5'- cUCGUUGGAAC-CG-UCGAGgaaGCGGu -3' miRNA: 3'- uAGCGACCUUGcGCuAGUUCug-CGCC- -5' |
|||||||
| 12493 | 5' | -53.8 | NC_003324.1 | + | 17423 | 0.66 | 0.8126 |
|
Target: 5'- cGUCGCccu--CGuCGGUCAuGACGCGGa -3' miRNA: 3'- -UAGCGaccuuGC-GCUAGUuCUGCGCC- -5' |
|||||||
| 12493 | 5' | -53.8 | NC_003324.1 | + | 23028 | 0.66 | 0.8126 |
|
Target: 5'- cAUCGCcaccggagacUGGGACGCGGUUAuuGuCGCGc -3' miRNA: 3'- -UAGCG----------ACCUUGCGCUAGUu-CuGCGCc -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home