miRNA display CGI


Results 21 - 26 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12493 5' -53.8 NC_003324.1 + 15665 0.71 0.493232
Target:  5'- -gCGCUcGAugACGCGAUCAAGGCG-GGc -3'
miRNA:   3'- uaGCGAcCU--UGCGCUAGUUCUGCgCC- -5'
12493 5' -53.8 NC_003324.1 + 49105 0.72 0.462647
Target:  5'- uUCGCUGccgguGACGCGAUCGccaAGAUgGCGGg -3'
miRNA:   3'- uAGCGACc----UUGCGCUAGU---UCUG-CGCC- -5'
12493 5' -53.8 NC_003324.1 + 29361 0.73 0.433088
Target:  5'- --aGCUGGAACGCaauccgccGAUCGAG-CGCGa -3'
miRNA:   3'- uagCGACCUUGCG--------CUAGUUCuGCGCc -5'
12493 5' -53.8 NC_003324.1 + 28839 0.77 0.234886
Target:  5'- --aGCUGGu-CGCGGUCAgAGAUGCGGa -3'
miRNA:   3'- uagCGACCuuGCGCUAGU-UCUGCGCC- -5'
12493 5' -53.8 NC_003324.1 + 17114 0.83 0.097273
Target:  5'- -aCGCUGcAGCGCucGAUCAAGACGCGGg -3'
miRNA:   3'- uaGCGACcUUGCG--CUAGUUCUGCGCC- -5'
12493 5' -53.8 NC_003324.1 + 55341 1.08 0.001822
Target:  5'- gAUCGCUGGAACGCGAUCAAGACGCGGc -3'
miRNA:   3'- -UAGCGACCUUGCGCUAGUUCUGCGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.