miRNA display CGI


Results 41 - 45 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12497 3' -49.4 NC_003324.1 + 7332 0.67 0.934014
Target:  5'- cGCGCGCcgag---GGCAcgcUGaCGAUGCg -3'
miRNA:   3'- aCGCGUGuuguaaaCCGU---AC-GCUACG- -5'
12497 3' -49.4 NC_003324.1 + 30005 0.67 0.934014
Target:  5'- gGUGCACuc----UGGCGacGCGAUGCu -3'
miRNA:   3'- aCGCGUGuuguaaACCGUa-CGCUACG- -5'
12497 3' -49.4 NC_003324.1 + 44826 0.67 0.922092
Target:  5'- aGgGgGCGGCGUcaUUGGCGUGCccgcUGCu -3'
miRNA:   3'- aCgCgUGUUGUA--AACCGUACGcu--ACG- -5'
12497 3' -49.4 NC_003324.1 + 28551 0.67 0.922092
Target:  5'- cGCGCuCAACA--UGGCG-GCGuuaGCa -3'
miRNA:   3'- aCGCGuGUUGUaaACCGUaCGCua-CG- -5'
12497 3' -49.4 NC_003324.1 + 56523 1.14 0.0017
Target:  5'- cUGCGCACAACAUUUGGCAUGCGAUGCg -3'
miRNA:   3'- -ACGCGUGUUGUAAACCGUACGCUACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.