miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12529 3' -51.5 NC_003345.1 + 74380 0.66 0.953062
Target:  5'- gGUCGaAAGAGCgUCAGCgGCUCaauuuCGUCCg -3'
miRNA:   3'- -CAGC-UUCUUG-AGUCG-UGAGc----GUAGGg -5'
12529 3' -51.5 NC_003345.1 + 36966 0.66 0.948619
Target:  5'- -aCGAGGGuggCGGCuucuCUUGCGUUCCg -3'
miRNA:   3'- caGCUUCUugaGUCGu---GAGCGUAGGG- -5'
12529 3' -51.5 NC_003345.1 + 60107 0.66 0.948619
Target:  5'- uUgGGAGAGCUgAGC-CUgaGCGUUCCg -3'
miRNA:   3'- cAgCUUCUUGAgUCGuGAg-CGUAGGG- -5'
12529 3' -51.5 NC_003345.1 + 44130 0.66 0.948619
Target:  5'- -aCGAAGAcCUUguucGCACUCGUcuguguUCCCg -3'
miRNA:   3'- caGCUUCUuGAGu---CGUGAGCGu-----AGGG- -5'
12529 3' -51.5 NC_003345.1 + 27197 0.66 0.943906
Target:  5'- -gUGGAGGGCgCAGuUACUCGuCGUCCg -3'
miRNA:   3'- caGCUUCUUGaGUC-GUGAGC-GUAGGg -5'
12529 3' -51.5 NC_003345.1 + 16194 0.66 0.943906
Target:  5'- aUCGAgccacGGAGCUucaacgacgacCGGCAUcggaGCAUCCCa -3'
miRNA:   3'- cAGCU-----UCUUGA-----------GUCGUGag--CGUAGGG- -5'
12529 3' -51.5 NC_003345.1 + 51136 0.66 0.943906
Target:  5'- -aCGAGGucgucaccGACUUGGaCGCUCGCGUUCa -3'
miRNA:   3'- caGCUUC--------UUGAGUC-GUGAGCGUAGGg -5'
12529 3' -51.5 NC_003345.1 + 48537 0.66 0.933657
Target:  5'- gGUCGAuaaagguuccAGAcggcuACUCGGUACUCGUcacuaaCCCg -3'
miRNA:   3'- -CAGCU----------UCU-----UGAGUCGUGAGCGua----GGG- -5'
12529 3' -51.5 NC_003345.1 + 25836 0.66 0.928117
Target:  5'- cGUCGAAGuuCUCuGCGa--GCGUCCg -3'
miRNA:   3'- -CAGCUUCuuGAGuCGUgagCGUAGGg -5'
12529 3' -51.5 NC_003345.1 + 32404 0.66 0.928117
Target:  5'- uGUCGAacgucAGAACaCGGgGCggCGCGUCCa -3'
miRNA:   3'- -CAGCU-----UCUUGaGUCgUGa-GCGUAGGg -5'
12529 3' -51.5 NC_003345.1 + 73626 0.66 0.928117
Target:  5'- aGUCGucAGcGGCUCcGCGCcccaUCGCGUCCUc -3'
miRNA:   3'- -CAGCu-UC-UUGAGuCGUG----AGCGUAGGG- -5'
12529 3' -51.5 NC_003345.1 + 68616 0.66 0.927548
Target:  5'- cGUCGAugcuGAACgUCuGCucacgaacguccuGCgagCGCAUCCCg -3'
miRNA:   3'- -CAGCUu---CUUG-AGuCG-------------UGa--GCGUAGGG- -5'
12529 3' -51.5 NC_003345.1 + 21720 0.67 0.916203
Target:  5'- -cCGgcGAACgucUCAGCAUcgagaaccuUCGCGUCCg -3'
miRNA:   3'- caGCuuCUUG---AGUCGUG---------AGCGUAGGg -5'
12529 3' -51.5 NC_003345.1 + 40922 0.67 0.916203
Target:  5'- -cCGAAGGccacCUCGGUAaagCGCGUCCUu -3'
miRNA:   3'- caGCUUCUu---GAGUCGUga-GCGUAGGG- -5'
12529 3' -51.5 NC_003345.1 + 32979 0.67 0.91432
Target:  5'- aGUUGAGGAACUUuugGGUguucuccgaguauaGCUCGUAgaagCCCu -3'
miRNA:   3'- -CAGCUUCUUGAG---UCG--------------UGAGCGUa---GGG- -5'
12529 3' -51.5 NC_003345.1 + 38545 0.67 0.909829
Target:  5'- aGUUGAGGAACUUGGUAaucgaCGCAUCg- -3'
miRNA:   3'- -CAGCUUCUUGAGUCGUga---GCGUAGgg -5'
12529 3' -51.5 NC_003345.1 + 75569 0.67 0.903182
Target:  5'- cGUCGggGucgaAGCUCGGCucaUCGCcgucuucUCCCc -3'
miRNA:   3'- -CAGCuuC----UUGAGUCGug-AGCGu------AGGG- -5'
12529 3' -51.5 NC_003345.1 + 52566 0.68 0.873917
Target:  5'- aUCGAGGAugUuCAGCAcCUCGUugaCCu -3'
miRNA:   3'- cAGCUUCUugA-GUCGU-GAGCGuagGG- -5'
12529 3' -51.5 NC_003345.1 + 76903 0.68 0.857752
Target:  5'- -aCGGAGAGCgaaccCGGCcCUCGCGUgUCg -3'
miRNA:   3'- caGCUUCUUGa----GUCGuGAGCGUAgGG- -5'
12529 3' -51.5 NC_003345.1 + 25506 0.69 0.840638
Target:  5'- cUCGGAGAGCgggaCGGCGCUgauagCGgGUUCCg -3'
miRNA:   3'- cAGCUUCUUGa---GUCGUGA-----GCgUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.