miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12585 5' -53.8 NC_003345.1 + 62742 0.66 0.887721
Target:  5'- uGAAGC--GGGUauCCGCUUCGGAuucACUCg -3'
miRNA:   3'- cCUUCGuuUCCG--GGCGGAGCUU---UGGG- -5'
12585 5' -53.8 NC_003345.1 + 30697 0.66 0.880387
Target:  5'- -uGAGCcGGGaGUCCGaCUCGGAACCg -3'
miRNA:   3'- ccUUCGuUUC-CGGGCgGAGCUUUGGg -5'
12585 5' -53.8 NC_003345.1 + 46296 0.66 0.872806
Target:  5'- aGGAAuCGAGuaCCCGCCUCGAugguucuguccAGCUCg -3'
miRNA:   3'- -CCUUcGUUUccGGGCGGAGCU-----------UUGGG- -5'
12585 5' -53.8 NC_003345.1 + 61624 0.66 0.872806
Target:  5'- aGGAAGCGAAGGaaCGCaUCGAGGa-- -3'
miRNA:   3'- -CCUUCGUUUCCggGCGgAGCUUUggg -5'
12585 5' -53.8 NC_003345.1 + 59105 0.66 0.85693
Target:  5'- cGAAGUAAAucGGCCUGCUcuuuUCGAGuucGCgCCg -3'
miRNA:   3'- cCUUCGUUU--CCGGGCGG----AGCUU---UG-GG- -5'
12585 5' -53.8 NC_003345.1 + 5522 0.67 0.848649
Target:  5'- cGGAGCGGGGGUaucCCUCGguAUCCa -3'
miRNA:   3'- cCUUCGUUUCCGggcGGAGCuuUGGG- -5'
12585 5' -53.8 NC_003345.1 + 70673 0.67 0.840149
Target:  5'- -uGGGuCGGAGcGCCCGUgUUGAAcACCCg -3'
miRNA:   3'- ccUUC-GUUUC-CGGGCGgAGCUU-UGGG- -5'
12585 5' -53.8 NC_003345.1 + 23571 0.67 0.831439
Target:  5'- -aGGGCGAcGGCCUG-UUCGuGACCCa -3'
miRNA:   3'- ccUUCGUUuCCGGGCgGAGCuUUGGG- -5'
12585 5' -53.8 NC_003345.1 + 54332 0.67 0.831439
Target:  5'- aGAcAGCcugcGGCCCGCuCUCGggGCg- -3'
miRNA:   3'- cCU-UCGuuu-CCGGGCG-GAGCuuUGgg -5'
12585 5' -53.8 NC_003345.1 + 14232 0.67 0.822526
Target:  5'- cGGAGGCAGAa--CCGCCUCuuGACUUc -3'
miRNA:   3'- -CCUUCGUUUccgGGCGGAGcuUUGGG- -5'
12585 5' -53.8 NC_003345.1 + 59502 0.67 0.813421
Target:  5'- cGAAGCGAGuccGGCCauCGCgCUCGAAccaguaauCCCg -3'
miRNA:   3'- cCUUCGUUU---CCGG--GCG-GAGCUUu-------GGG- -5'
12585 5' -53.8 NC_003345.1 + 69321 0.68 0.804132
Target:  5'- cGAGGCuGAGcGCCCGUUcCGcGACCUg -3'
miRNA:   3'- cCUUCGuUUC-CGGGCGGaGCuUUGGG- -5'
12585 5' -53.8 NC_003345.1 + 51482 0.68 0.804132
Target:  5'- -cAAGCGuAGuGCCCGUCUCGucuUCCa -3'
miRNA:   3'- ccUUCGUuUC-CGGGCGGAGCuuuGGG- -5'
12585 5' -53.8 NC_003345.1 + 22865 0.68 0.79467
Target:  5'- -cGAGCGGcAGGCCCGgCaggaagCGGGACUCg -3'
miRNA:   3'- ccUUCGUU-UCCGGGCgGa-----GCUUUGGG- -5'
12585 5' -53.8 NC_003345.1 + 71853 0.68 0.793714
Target:  5'- uGAAGCAggcaucGAGGCgguugcuUCGCCugUCGAAccGCCCa -3'
miRNA:   3'- cCUUCGU------UUCCG-------GGCGG--AGCUU--UGGG- -5'
12585 5' -53.8 NC_003345.1 + 2452 0.68 0.785044
Target:  5'- uGGcAAGUAAAGG-CCGCCaaGAGGCUa -3'
miRNA:   3'- -CC-UUCGUUUCCgGGCGGagCUUUGGg -5'
12585 5' -53.8 NC_003345.1 + 56646 0.68 0.785044
Target:  5'- cGGAGGCGGuuucGGCUa---UCGAGGCCCu -3'
miRNA:   3'- -CCUUCGUUu---CCGGgcggAGCUUUGGG- -5'
12585 5' -53.8 NC_003345.1 + 32543 0.68 0.785044
Target:  5'- gGGAAGCGuuccccAAGGCCgUGaCCgUCGAggucgaugaAGCCCa -3'
miRNA:   3'- -CCUUCGU------UUCCGG-GC-GG-AGCU---------UUGGG- -5'
12585 5' -53.8 NC_003345.1 + 30956 0.68 0.784073
Target:  5'- -cGAGCgGAAGGCCCGUccucccuCUCGGGACg- -3'
miRNA:   3'- ccUUCG-UUUCCGGGCG-------GAGCUUUGgg -5'
12585 5' -53.8 NC_003345.1 + 6089 0.68 0.778214
Target:  5'- uGGAAGCGgcuucggAAGGCUCGCUggaugaaucggugguUCGAGauguAUCCg -3'
miRNA:   3'- -CCUUCGU-------UUCCGGGCGG---------------AGCUU----UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.