miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12592 3' -56.2 NC_003345.1 + 13965 0.66 0.801946
Target:  5'- cCGAgUgGACUucauucuggugguGAAGCCCGAgGACUCu -3'
miRNA:   3'- uGUUgGgCUGA-------------CUUCGGGCUgCUGGG- -5'
12592 3' -56.2 NC_003345.1 + 24523 0.66 0.793577
Target:  5'- gACAaauACCuCGaAUUGAccagcGGCCCG-CGACCUg -3'
miRNA:   3'- -UGU---UGG-GC-UGACU-----UCGGGCuGCUGGG- -5'
12592 3' -56.2 NC_003345.1 + 71128 0.66 0.793577
Target:  5'- gACAGCCCGA----AGCCgGuuuCGACCg -3'
miRNA:   3'- -UGUUGGGCUgacuUCGGgCu--GCUGGg -5'
12592 3' -56.2 NC_003345.1 + 74164 0.66 0.793577
Target:  5'- gGCGACCCgGACUcc-GCUCGugGugaagACCCu -3'
miRNA:   3'- -UGUUGGG-CUGAcuuCGGGCugC-----UGGG- -5'
12592 3' -56.2 NC_003345.1 + 51439 0.66 0.784131
Target:  5'- --uACCgGcGCUGGAGCCUc-CGGCCCg -3'
miRNA:   3'- uguUGGgC-UGACUUCGGGcuGCUGGG- -5'
12592 3' -56.2 NC_003345.1 + 29625 0.66 0.774539
Target:  5'- gGCGACCgaaGACUcGAAGCgUu-CGACCCu -3'
miRNA:   3'- -UGUUGGg--CUGA-CUUCGgGcuGCUGGG- -5'
12592 3' -56.2 NC_003345.1 + 8531 0.66 0.774539
Target:  5'- -uGACUCaGAUgugGAAGUCCcaacacggcGACGACCCg -3'
miRNA:   3'- ugUUGGG-CUGa--CUUCGGG---------CUGCUGGG- -5'
12592 3' -56.2 NC_003345.1 + 68084 0.66 0.774539
Target:  5'- cGCAcuccGCCgGAUUaaGAAGCCCGGCG-CUa -3'
miRNA:   3'- -UGU----UGGgCUGA--CUUCGGGCUGCuGGg -5'
12592 3' -56.2 NC_003345.1 + 33169 0.66 0.76481
Target:  5'- gGCGGgUUGGCgGucGGCCCGGCGuaGCCCu -3'
miRNA:   3'- -UGUUgGGCUGaCu-UCGGGCUGC--UGGG- -5'
12592 3' -56.2 NC_003345.1 + 46916 0.66 0.76481
Target:  5'- gACAACCCGcgUGAcGCCUuuGACGACg- -3'
miRNA:   3'- -UGUUGGGCugACUuCGGG--CUGCUGgg -5'
12592 3' -56.2 NC_003345.1 + 21214 0.66 0.754956
Target:  5'- aGCGuCCaCGAUgagGGAcuGCCCGuaggACGACCCg -3'
miRNA:   3'- -UGUuGG-GCUGa--CUU--CGGGC----UGCUGGG- -5'
12592 3' -56.2 NC_003345.1 + 38670 0.67 0.744986
Target:  5'- uCGACgCCGAC-GAAGCCCGcaagcggauguACGACa- -3'
miRNA:   3'- uGUUG-GGCUGaCUUCGGGC-----------UGCUGgg -5'
12592 3' -56.2 NC_003345.1 + 12924 0.67 0.73491
Target:  5'- uCAGCCCGAUUGGuuaCUGcCGACUCa -3'
miRNA:   3'- uGUUGGGCUGACUucgGGCuGCUGGG- -5'
12592 3' -56.2 NC_003345.1 + 69201 0.67 0.73491
Target:  5'- aACGACCCGuGC-GAAGgaCGACGACUa -3'
miRNA:   3'- -UGUUGGGC-UGaCUUCggGCUGCUGGg -5'
12592 3' -56.2 NC_003345.1 + 57858 0.67 0.730853
Target:  5'- cGCGACCCGAUuaUGAAggucgucGUUCGAgggaagcagguucaCGACCCg -3'
miRNA:   3'- -UGUUGGGCUG--ACUU-------CGGGCU--------------GCUGGG- -5'
12592 3' -56.2 NC_003345.1 + 8111 0.67 0.724739
Target:  5'- cCGAcCCCGACgacccGAAGCCucuccaCGACGACUUc -3'
miRNA:   3'- uGUU-GGGCUGa----CUUCGG------GCUGCUGGG- -5'
12592 3' -56.2 NC_003345.1 + 70966 0.67 0.724739
Target:  5'- -gAACCCGGCcc--GCCCGAaGACCg -3'
miRNA:   3'- ugUUGGGCUGacuuCGGGCUgCUGGg -5'
12592 3' -56.2 NC_003345.1 + 17498 0.67 0.714482
Target:  5'- aACAGCCCGAacacggcaguCUGAGGgUCGcuACGACUg -3'
miRNA:   3'- -UGUUGGGCU----------GACUUCgGGC--UGCUGGg -5'
12592 3' -56.2 NC_003345.1 + 9226 0.68 0.64114
Target:  5'- uCGACCCG-CcGGAGuuaCCCGACGAgauuCCCg -3'
miRNA:   3'- uGUUGGGCuGaCUUC---GGGCUGCU----GGG- -5'
12592 3' -56.2 NC_003345.1 + 42002 0.68 0.64114
Target:  5'- aGCgAACCCGAC-GAAacGCCCGACucgugggaACCCu -3'
miRNA:   3'- -UG-UUGGGCUGaCUU--CGGGCUGc-------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.