Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12617 | 3' | -56.6 | NC_003345.1 | + | 54043 | 0.66 | 0.765726 |
Target: 5'- gCGG-CGAGAacCGCgaGUCGGacgaaaaCCUCCGCg -3' miRNA: 3'- aGCCaGCUUU--GCGg-CAGUC-------GGAGGCG- -5' |
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12617 | 3' | -56.6 | NC_003345.1 | + | 73613 | 0.66 | 0.766699 |
Target: 5'- -aGGcCGuAGGaguaGUCGUCAGCggCUCCGCg -3' miRNA: 3'- agCCaGC-UUUg---CGGCAGUCG--GAGGCG- -5' |
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12617 | 3' | -56.6 | NC_003345.1 | + | 73067 | 0.66 | 0.766699 |
Target: 5'- uUCGGUgGGAACGCCGcgagaaCGGUCgCCa- -3' miRNA: 3'- -AGCCAgCUUUGCGGCa-----GUCGGaGGcg -5' |
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12617 | 3' | -56.6 | NC_003345.1 | + | 67855 | 0.66 | 0.772508 |
Target: 5'- gUCGGUCGAugccgagugaacagAACGUCGU--GCCauuauagagugauUCCGCc -3' miRNA: 3'- -AGCCAGCU--------------UUGCGGCAguCGG-------------AGGCG- -5' |
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12617 | 3' | -56.6 | NC_003345.1 | + | 47445 | 0.66 | 0.776354 |
Target: 5'- cUC-GUCGGAACagGUCGUCAGCCcCCu- -3' miRNA: 3'- -AGcCAGCUUUG--CGGCAGUCGGaGGcg -5' |
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12617 | 3' | -56.6 | NC_003345.1 | + | 32773 | 0.66 | 0.785874 |
Target: 5'- cCGGUgCGAGAgaGCgGUCGGCgUugacaCCGCg -3' miRNA: 3'- aGCCA-GCUUUg-CGgCAGUCGgA-----GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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