miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12648 5' -56.8 NC_003345.1 + 50113 0.66 0.748685
Target:  5'- gACUGCCGCugauauuuuCGCUcaccagaacgaugagGCCACCAGCu--CCa -3'
miRNA:   3'- -UGAUGGUG---------GCGG---------------UGGUGGUCGcuuGG- -5'
12648 5' -56.8 NC_003345.1 + 681 0.66 0.744665
Target:  5'- --gGCCgACCGCC-CCgguuaacaucaaACCggGGCGGGCCg -3'
miRNA:   3'- ugaUGG-UGGCGGuGG------------UGG--UCGCUUGG- -5'
12648 5' -56.8 NC_003345.1 + 59426 0.66 0.744665
Target:  5'- ---cCCGCCGaCCACgGgUAGCGGugCg -3'
miRNA:   3'- ugauGGUGGC-GGUGgUgGUCGCUugG- -5'
12648 5' -56.8 NC_003345.1 + 5402 0.66 0.734544
Target:  5'- cCUcauCCACCGCaUACuCugCGGCGAAUa -3'
miRNA:   3'- uGAu--GGUGGCG-GUG-GugGUCGCUUGg -5'
12648 5' -56.8 NC_003345.1 + 16686 0.66 0.723299
Target:  5'- uACUgGCCgACUGCCAacgaCACCuGCGAcuuguucACCg -3'
miRNA:   3'- -UGA-UGG-UGGCGGUg---GUGGuCGCU-------UGG- -5'
12648 5' -56.8 NC_003345.1 + 42890 0.66 0.714022
Target:  5'- --aAUCugUGCCAUCAggaCAGCGAACg -3'
miRNA:   3'- ugaUGGugGCGGUGGUg--GUCGCUUGg -5'
12648 5' -56.8 NC_003345.1 + 31000 0.67 0.672159
Target:  5'- --gACCucUCGCCGCCGCCGGUuuaGAAgCg -3'
miRNA:   3'- ugaUGGu-GGCGGUGGUGGUCG---CUUgG- -5'
12648 5' -56.8 NC_003345.1 + 45280 0.67 0.672159
Target:  5'- --aGCuCACCGUCACCACacuccgggcaGGUGAGCg -3'
miRNA:   3'- ugaUG-GUGGCGGUGGUGg---------UCGCUUGg -5'
12648 5' -56.8 NC_003345.1 + 12682 0.67 0.66158
Target:  5'- cAUUA-UACCGUCACCucagcggcgugaGCCGGuCGAACCg -3'
miRNA:   3'- -UGAUgGUGGCGGUGG------------UGGUC-GCUUGG- -5'
12648 5' -56.8 NC_003345.1 + 55953 0.67 0.66158
Target:  5'- --gACCGCCaGCacccCCACCAGCgccguguggaGAGCCa -3'
miRNA:   3'- ugaUGGUGG-CGgu--GGUGGUCG----------CUUGG- -5'
12648 5' -56.8 NC_003345.1 + 47139 0.67 0.650976
Target:  5'- --gGCCGgaCGCCucGCCACCAGuCGAAUUa -3'
miRNA:   3'- ugaUGGUg-GCGG--UGGUGGUC-GCUUGG- -5'
12648 5' -56.8 NC_003345.1 + 7601 0.67 0.650976
Target:  5'- --aACCGCCGCCcuCCuuauccugagugACCGGCGuuCCa -3'
miRNA:   3'- ugaUGGUGGCGGu-GG------------UGGUCGCuuGG- -5'
12648 5' -56.8 NC_003345.1 + 18768 0.67 0.647791
Target:  5'- ---cCCACCGaCCG-CACCAGCGGugagaagcaugaacGCCa -3'
miRNA:   3'- ugauGGUGGC-GGUgGUGGUCGCU--------------UGG- -5'
12648 5' -56.8 NC_003345.1 + 29768 0.67 0.640355
Target:  5'- --aACCcCCGCCGCCuCCAGCuuuucgcuGACCc -3'
miRNA:   3'- ugaUGGuGGCGGUGGuGGUCGc-------UUGG- -5'
12648 5' -56.8 NC_003345.1 + 55555 0.68 0.633979
Target:  5'- aGCUAaaguccaUACCGUCACCACCuugggaguccccaucGGCGucACCg -3'
miRNA:   3'- -UGAUg------GUGGCGGUGGUGG---------------UCGCu-UGG- -5'
12648 5' -56.8 NC_003345.1 + 63462 0.68 0.629728
Target:  5'- gGCUGuccUCACCGa-ACCACUcGCGGGCCu -3'
miRNA:   3'- -UGAU---GGUGGCggUGGUGGuCGCUUGG- -5'
12648 5' -56.8 NC_003345.1 + 71535 0.68 0.629728
Target:  5'- -gUACC-CUGUCGCCAcgcCCGGCGAGuuCCg -3'
miRNA:   3'- ugAUGGuGGCGGUGGU---GGUCGCUU--GG- -5'
12648 5' -56.8 NC_003345.1 + 11644 0.68 0.624415
Target:  5'- cACUcCCACCacaagggagagaacgGCCugauucacacuaacuCCuACCAGCGAGCCg -3'
miRNA:   3'- -UGAuGGUGG---------------CGGu--------------GG-UGGUCGCUUGG- -5'
12648 5' -56.8 NC_003345.1 + 77492 0.68 0.619103
Target:  5'- cCUGCCcCUGCC-CCGC--GCGGGCCg -3'
miRNA:   3'- uGAUGGuGGCGGuGGUGguCGCUUGG- -5'
12648 5' -56.8 NC_003345.1 + 55611 0.68 0.619103
Target:  5'- ---cCCGCC-CCACCACCGcCGGACg -3'
miRNA:   3'- ugauGGUGGcGGUGGUGGUcGCUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.