Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12702 | 3' | -50.4 | NC_003349.1 | + | 51486 | 0.67 | 0.982012 |
Target: 5'- cGCGACUGGaucaauucggaccUGCUGCCGAAgcuuugcGACGaugGCa -3' miRNA: 3'- uCGUUGGCU-------------GCGAUGGCUU-------UUGCa--CG- -5' |
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12702 | 3' | -50.4 | NC_003349.1 | + | 43084 | 0.67 | 0.982429 |
Target: 5'- uGGCAuCUGcgcGCGCUACCc--AACGUGUa -3' miRNA: 3'- -UCGUuGGC---UGCGAUGGcuuUUGCACG- -5' |
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12702 | 3' | -50.4 | NC_003349.1 | + | 40384 | 0.7 | 0.934797 |
Target: 5'- cAGCGAaauuccguaaaaCGACacaaauauuugaauGCUACCGAuauGGCGUGCa -3' miRNA: 3'- -UCGUUg-----------GCUG--------------CGAUGGCUu--UUGCACG- -5' |
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12702 | 3' | -50.4 | NC_003349.1 | + | 22002 | 0.72 | 0.888718 |
Target: 5'- gAGUAAuCCGugGCUACgGGuaaaguaguAAUGUGCa -3' miRNA: 3'- -UCGUU-GGCugCGAUGgCUu--------UUGCACG- -5' |
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12702 | 3' | -50.4 | NC_003349.1 | + | 20809 | 0.69 | 0.95547 |
Target: 5'- uGCAAaugauucuucaUGAUGUUGCCGAauaucuuguuguGAACGUGCa -3' miRNA: 3'- uCGUUg----------GCUGCGAUGGCU------------UUUGCACG- -5' |
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12702 | 3' | -50.4 | NC_003349.1 | + | 16600 | 0.7 | 0.937351 |
Target: 5'- cGGCGguGCgCGACGgUGCCGAAAAUGa-- -3' miRNA: 3'- -UCGU--UG-GCUGCgAUGGCUUUUGCacg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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